View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_high_30 (Length: 213)
Name: NF8661_high_30
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 39511028 - 39511195
Alignment:
| Q |
15 |
acttagctctccaaaattctcttctctaaaaatgaannnnnnnnaaataagaaaactctacgcacacatttggaaca----ggtatgaatccctcttaac |
110 |
Q |
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| T |
39511028 |
acttagctctccaaaattctcttctctaaaaattaaatttttt-agataagaaaactctacgcacacatttggaacaagtaggtatgaatccctctcaac |
39511126 |
T |
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| Q |
111 |
ccacatgcatcataagcgtgagcttacatatgaaaccatggtgtgagtcccttcgaatatgcaacgatcaa |
181 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||| |||| |||||||||| ||||||| ||||| |
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| T |
39511127 |
ccacatgcgtcataagcgcgagcttacatatgaaaccatg--gtgaatcccttcgaacatgcaaccatcaa |
39511195 |
T |
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