View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8661_high_7 (Length: 353)

Name: NF8661_high_7
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8661_high_7
NF8661_high_7
[»] chr2 (4 HSPs)
chr2 (18-353)||(17461381-17461716)
chr2 (132-342)||(17455422-17455632)
chr2 (30-73)||(17455171-17455214)
chr2 (197-342)||(17804742-17804887)
[»] chr4 (2 HSPs)
chr4 (131-353)||(52142814-52143036)
chr4 (30-68)||(52143069-52143107)


Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 17461716 - 17461381
Alignment:
Q  18 aatcagatgtctcaagaacagcattgttgagctctccatcacttgaccttggtcattggttggtccatttgaccttggaaaggttttagctctgatctat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17461716 aatcagatgtctcaagaacagcattgttgagctctccatcacttgaccttggtcattggttggtccatttgaccttggaaaggttttagctctgatctat 17461617  T
Q  118 ttttctccttaacttccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaagaaagcatgcaatttatatgagaagaatat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17461616 ttttctccttaacttccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaagaaagcatgcaatttatatgagaagaatat 17461517  T
Q  218 ggggacagtcagtgccatggttgcaatggtaaatatgctttgaagaacgatgtacatcagcaagcgattttcatcgccaagcaacccacttaagcgccac 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  17461516 ggggacagtcagtgccatggttgcaatggtaaatatgctttgaagaacgatgtacatcagcaagcgattttgatccccaagcaacccacttaagcgccac 17461417  T
Q  318 catacattgtttgctttctgagcttgtttggagagt 353  Q
    ||||||||||||||||||| ||||| ||| ||||||    
T  17461416 catacattgtttgctttcttagctttttttgagagt 17461381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 132 - 342
Target Start/End: Original strand, 17455422 - 17455632
Alignment:
Q  132 tccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaagaaagcatgcaatttatatgagaagaatatggggacagtcagtg 231  Q
    |||||||||||||||||| | |||||||||||||||| |||||||||||||| |||||  |||||||||| | |||| ||||||||||||||||||||||    
T  17455422 tccaacagaaaacttcctccattccatactgatacagaaagcttaattattttgaagagtgcatgcaattcaaatgacaagaatatggggacagtcagtg 17455521  T
Q  232 ccatggttgcaatggtaaatatgctttgaagaacgatgtacatcagcaagcgattttcatcgccaagcaacccacttaagcgccaccatacattgtttgc 331  Q
    |||| ||| ||||||||||||| | |||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||    
T  17455522 ccattgttacaatggtaaatattccttgaagaacgatgtacatcagcaagcgattttgatccccaagcaacccacttaagtgccaccatacattgtttgc 17455621  T
Q  332 tttctgagctt 342  Q
    ||||| |||||    
T  17455622 tttcttagctt 17455632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 17455171 - 17455214
Alignment:
Q  30 caagaacagcattgttgagctctccatcacttgaccttggtcat 73  Q
    |||||||||||||||||| ||||||||||||||| |||||||||    
T  17455171 caagaacagcattgttgaactctccatcacttgatcttggtcat 17455214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 342
Target Start/End: Original strand, 17804742 - 17804887
Alignment:
Q  197 caatttatatgagaagaatatggggacagtcagtgccatggttgcaatggtaaatatgctttgaagaacgatgtacatcagcaagcgattttcatcgcca 296  Q
    ||||||||| || || ||||| || |||||||| ||||| ||||| |  ||||| || | ||| ||||  ||| |||| | |||||| ||||  || ||     
T  17804742 caatttataggacaaaaatatcggaacagtcagcgccatcgttgccaccgtaaacattccttgcagaagaatgaacattaacaagcggttttggtccccg 17804841  T
Q  297 agcaacccacttaagcgccaccatacattgtttgctttctgagctt 342  Q
    ||||| ||||||||||||||||| |  || ||||||||||||||||    
T  17804842 agcaagccacttaagcgccaccacatgttatttgctttctgagctt 17804887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 131 - 353
Target Start/End: Complemental strand, 52143036 - 52142814
Alignment:
Q  131 ttccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaagaaagcatgcaatttatatgagaagaatatggggacagtcagt 230  Q
    ||||||||| ||||||||  |||||||||||||  ||| || ||||| |||||||||||   ||||||||| |||||| | |||||||||||||| ||||    
T  52143036 ttccaacaggaaacttccaccgttccatactgaagcagaaaccttaagtatttggaagattacatgcaattcatatgacaggaatatggggacagccagt 52142937  T
Q  231 gccatggttgcaatggtaaatatgctttgaagaacgatgtacatcagcaagcgattttcatcgccaagcaacccacttaagcgccaccatacattgtttg 330  Q
    ||||||||||||||||||||||||| ||| ||||  |||||||| |||| |||||||| ||| ||||  | |||||||| ||||||||||| ||||||||    
T  52142936 gccatggttgcaatggtaaatatgccttgtagaaaaatgtacattagcatgcgattttgatccccaaatagcccacttaggcgccaccatatattgtttg 52142837  T
Q  331 ctttctgagcttgtttggagagt 353  Q
    |||||| ||||| ||| ||||||    
T  52142836 ctttcttagctttttttgagagt 52142814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 52143107 - 52143069
Alignment:
Q  30 caagaacagcattgttgagctctccatcacttgaccttg 68  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  52143107 caagaacagcattgttgagctctccgttacttgaccttg 52143069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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