View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_1 (Length: 703)
Name: NF8661_low_1
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 218 - 682
Target Start/End: Original strand, 39675407 - 39675889
Alignment:
| Q |
218 |
agtcaagtaaaggcttcttgtgatgatgtg--atgttagcatctccacaaaatatattatcttgacattactacaatattccctcgttgtgcacgagtta |
315 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39675407 |
agtcaagtaaaggcttcttgtgatgatgtgtgatgttagcatctccacaaaatatattatcttgacattactacaatattccctcgttgttcacgagtta |
39675506 |
T |
|
| Q |
316 |
attacgatgtaactatgaaacttcctca----------------ctctcttattctttgtctgtctataaataacattctaaatcttggctttctttttc |
399 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39675507 |
attacgatctaactatgaaacttcctcactctcactctcactcactctcttattctttgtctgtctataaataacattctaaatcttggctttctttttc |
39675606 |
T |
|
| Q |
400 |
aagtttcaaacaaattaccaatcaatctccctgaactcctttctttcttttcattttctggatttcaaatccttcacttaacaagagagaaatggaagtt |
499 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39675607 |
aagtttcaaaccaattaccaatcaatctccctgaactcctttctttcttttcattttctggatttcaaatccttcacttaacaagagagaaatggaagtt |
39675706 |
T |
|
| Q |
500 |
caacgccaaatatattctgatccctccagcaaaacaaagaagaaccaaaagcagcagaattcactgtcacaaacttcttcactttacttaacaaacactt |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39675707 |
caacgccaaatatattctgatccctccagcaaaacaaagaagaaccaaaagcagcagaattcactgtcacaaacttcttcactttacttaacaaacactt |
39675806 |
T |
|
| Q |
600 |
ttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccat |
682 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39675807 |
ttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccat |
39675889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 573 - 681
Target Start/End: Complemental strand, 10888167 - 10888059
Alignment:
| Q |
573 |
cttcttcactttacttaacaaacacttttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctac |
672 |
Q |
| |
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|||||||||| || ||||||||| || ||||||| |||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10888167 |
cttcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctac |
10888068 |
T |
|
| Q |
673 |
acctctcca |
681 |
Q |
| |
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||||||||| |
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| T |
10888067 |
acctctcca |
10888059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 584 - 681
Target Start/End: Original strand, 10866218 - 10866315
Alignment:
| Q |
584 |
tacttaacaaacacttttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctcca |
681 |
Q |
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||||||||||| | ||||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10866218 |
tacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctcca |
10866315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 584 - 681
Target Start/End: Complemental strand, 10874087 - 10873990
Alignment:
| Q |
584 |
tacttaacaaacacttttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctcca |
681 |
Q |
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|
||||||||||| | ||||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10874087 |
tacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctcca |
10873990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 584 - 681
Target Start/End: Complemental strand, 10879158 - 10879061
Alignment:
| Q |
584 |
tacttaacaaacacttttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctcca |
681 |
Q |
| |
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||||||||||| | ||||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10879158 |
tacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctcca |
10879061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 584 - 681
Target Start/End: Complemental strand, 10884229 - 10884132
Alignment:
| Q |
584 |
tacttaacaaacacttttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctcca |
681 |
Q |
| |
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||||||||||| | ||||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10884229 |
tacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctcca |
10884132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 575 - 678
Target Start/End: Original strand, 10045775 - 10045878
Alignment:
| Q |
575 |
tcttcactttacttaacaaacacttttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacac |
674 |
Q |
| |
|
|||||||| |||||||||||| | ||||||||||||| |||||||||||||| || ||||||||| || |||||||||| |||||||||||||| |||| |
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| T |
10045775 |
tcttcactctacttaacaaacgcaattttcttcggtcttttcttctccgtcgcgtattttcttcttcacaggtggcgtgagaagatccgaacctccacac |
10045874 |
T |
|
| Q |
675 |
ctct |
678 |
Q |
| |
|
|||| |
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|
| T |
10045875 |
ctct |
10045878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 104 - 195
Target Start/End: Original strand, 39675263 - 39675353
Alignment:
| Q |
104 |
ttacgttcaacgaattatttaaaactttgtttctttcaaatttgnnnnnnnnaataacactagttttttaaaacttaattagtctgtgcaca |
195 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39675263 |
ttacgttcaatgaattatttaaaactttgtttctttcaaatttgtttttttt-ataacactagttttttaaaacttaattagtctgtgcaca |
39675353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 10865768 - 10865823
Alignment:
| Q |
217 |
tagtcaagtaaaggcttcttgtgatgatgtgatgttagca--tctccacaaaatat |
270 |
Q |
| |
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||||||| ||||||||||| |||||||||| ||||||||| |||||||||||||| |
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|
| T |
10865768 |
tagtcaaataaaggcttctagtgatgatgtaatgttagcatctctccacaaaatat |
10865823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 39675213 - 39675245
Alignment:
| Q |
54 |
ctccatcatttaaaacgttagtcgctaagtttg |
86 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |
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|
| T |
39675213 |
ctccatcatttaaaacgttagtcgctaattttg |
39675245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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