View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8661_low_10 (Length: 465)

Name: NF8661_low_10
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8661_low_10
NF8661_low_10
[»] chr3 (4 HSPs)
chr3 (1-436)||(2794095-2794530)
chr3 (17-196)||(9720020-9720198)
chr3 (248-377)||(2771866-2771995)
chr3 (248-309)||(2834925-2834986)
[»] chr6 (1 HSPs)
chr6 (17-203)||(23906786-23906971)
[»] chr8 (2 HSPs)
chr8 (17-246)||(30196454-30196676)
chr8 (18-125)||(35400147-35400256)
[»] chr5 (1 HSPs)
chr5 (111-196)||(1063509-1063593)
[»] chr2 (1 HSPs)
chr2 (103-231)||(9323949-9324075)
[»] chr1 (3 HSPs)
chr1 (17-176)||(9371209-9371368)
chr1 (69-235)||(40965366-40965530)
chr1 (62-211)||(43741747-43741890)
[»] chr4 (1 HSPs)
chr4 (114-204)||(11320955-11321044)
[»] chr7 (2 HSPs)
chr7 (109-204)||(3696699-3696793)
chr7 (41-123)||(11434141-11434223)


Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 2794095 - 2794530
Alignment:
Q  1 tgttttaagtttgcaataagatttcaaactttaagtagtgtatgcactttgtagttgatatttaatattatttaagtagaatgcttcgattttggtcgcg 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2794095 tgttttatgtttgcaataagatttcaaactttaagtagtgtatgcactttctagttgatatttaatattatttaagtagaatgcttcgattttggtcgcg 2794194  T
Q  101 atcttcgattttgcgatcttgctatccccttttcgattctacaaaatcaatgcagtagaatactttgattttggttgcaattttaggttttgcgatcttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2794195 atcttcgattttgcgatcttgctatccccttttcgattctacaaaatcaatgcagtagaatcctttgattttggttgcaattttaggttttgcgatcttg 2794294  T
Q  201 ctattatcttttcgatatgaagcaaaatctcaattgtgataaccttgatcaaaaccacttcatctgaatgaatatgttaactttgcttaccaagattgat 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2794295 ctatcatcttttcgatatgaagcaaaatctcaattgtgataaccttgatcaaaaccacttcatctgaatgaatatgttaactttgcttaccaagattgat 2794394  T
Q  301 gctactatcataatcttgctatagctacaaataactgaatgatttgaagttaattgagaggacatgaatgtgtctcagccaaccggtttcatccatcatc 400  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2794395 gctactatcataatcttgctataactacaaataactgaatgatttgaagttaattgagaggacatgaatgtgtctcagccaaccgctttcatccatcatc 2794494  T
Q  401 tcttcattaaatttgaaaactgaaaaagccttaatt 436  Q
    ||||||||||||||||||||||||||||||||||||    
T  2794495 tcttcattaaatttgaaaactgaaaaagccttaatt 2794530  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 9720198 - 9720020
Alignment:
Q  17 taagatttcaaactttaagtagtgtatgcactttgtagttgatatttaatattatttaagtagaatgcttcgattttggtcgcgatcttcgattttgcga 116  Q
    |||||||||||||||||||| || |||||||||| ||||  |||||||||||||||| ||||||||  |||||||||| | | ||| || |||||| | |    
T  9720198 taagatttcaaactttaagttgtttatgcactttatagtatatatttaatattatttgagtagaatttttcgattttgattgagatatttgattttacaa 9720099  T
Q  117 tcttgctatccccttttcgattctacaaaatcaatgcagtagaatactttgattttggttgcaattttaggttttgcgat 196  Q
    | ||| ||||||| |||||||||||||||||||||  | |||||| ||| |||||||||||| |||||| ||||| ||||    
T  9720098 ttttggtatcccc-tttcgattctacaaaatcaatagaatagaatccttcgattttggttgcgattttatgttttacgat 9720020  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 377
Target Start/End: Original strand, 2771866 - 2771995
Alignment:
Q  248 atcaaaaccacttcatctgaatgaatatgttaactttgcttaccaagattgatgctactatcataatcttgctatagctacaaataactgaatgatttga 347  Q
    |||||||| |||||||   |||||||||||| | |||||| |||||| ||||||||||||||||||||| ||| || ||| |||   ||   ||||||||    
T  2771866 atcaaaactacttcattcaaatgaatatgtttattttgctaaccaagcttgatgctactatcataatctagctgtaactataaaggcctagttgatttga 2771965  T
Q  348 agttaattgagaggacatgaatgtgtctca 377  Q
    ||||||| ||||||| ||| |||| |||||    
T  2771966 agttaatcgagaggatatgtatgtatctca 2771995  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 309
Target Start/End: Complemental strand, 2834986 - 2834925
Alignment:
Q  248 atcaaaaccacttcatctgaatgaatatgttaactttgcttaccaagattgatgctactatc 309  Q
    |||||||||||||||| ||||||||||| || | |||||| |||| ||| ||||||||||||    
T  2834986 atcaaaaccacttcatatgaatgaatatttttattttgctaaccacgatcgatgctactatc 2834925  T

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Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 23906971 - 23906786
Alignment:
Q  17 taagatttcaaactttaagtagtgtatgcactttgtagttgatatttaatattatttaagtagaatgcttcgattttggtcgcgatcttcgattttgcga 116  Q
    |||||||| |||||||||||||| |||||||||| ||||  |||||||||||||||| |||| ||| |||| |||||||| |||||||||||||||||||    
T  23906971 taagattttaaactttaagtagtttatgcactttatagtatatatttaatattatttgagtaaaatccttcaattttggtggcgatcttcgattttgcga 23906872  T
Q  117 tcttgctatccccttttcgattctacaaaatcaatgcagtagaatactttgattttggttgcaattttaggttttgcgatcttgcta 203  Q
    || |||  ||||| ||| |||||||||| ||||||  |||||||| |||  |||||||||||  ||||||||||||| |||||||||    
T  23906871 tcatgccgtcccc-tttggattctacaatatcaattgagtagaatccttcaattttggttgcggttttaggttttgcaatcttgcta 23906786  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 30196676 - 30196454
Alignment:
Q  17 taagatttcaaactttaagtagtgtatgcactttgtagttgatatttaatattatttaagtagaatgcttcgattttggtcgcgatcttcgattttgcga 116  Q
    ||||||||||||| || |||||| |||||||   ||| |  |||||||||||||||| | |||| | |||||| ||| || ||||| ||||||||||| |    
T  30196676 taagatttcaaaccttgagtagtttatgcac---gtaatatatatttaatattatttgattagattccttcgaatttagttgcgattttcgattttgcaa 30196580  T
Q  117 tcttgctatccccttttcgattctacaaaatcaatgcagtagaatactttgattttggttgcaattttaggttttgcgatcttgctattatcttttcgat 216  Q
    ||||||||| ||||||| ||||||||||||| |||  |||||||| ||| ||||||||||    ||||||||||   |||||||||||  ||||   |||    
T  30196579 tcttgctattccctttt-gattctacaaaattaatttagtagaatccttcgattttggttagggttttaggtttcatgatcttgctatcctctt---gat 30196484  T
Q  217 atgaagcaaaatctcaattgtgataacctt 246  Q
     |||||||||||||||||| ||| ||||||    
T  30196483 ttgaagcaaaatctcaattctgaaaacctt 30196454  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 35400147 - 35400256
Alignment:
Q  18 aagatttcaaactttaagtagtgtatgcactttgtagttgatatttaatat--tatttaagtagaatgcttcgattttggtcgcgatcttcgattttgcg 115  Q
    ||||||||||| ||||| |||| |||||||||| ||||  |||||||||||  ||| | |||| ||| | | ||||||| | ||||| ||||||||| ||    
T  35400147 aagatttcaaattttaaatagtttatgcactttatagtatatatttaatataatatgtgagtataatccattgattttgattgcgatattcgattttacg 35400246  T
Q  116 atcttgctat 125  Q
    ||||||||||    
T  35400247 atcttgctat 35400256  T

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Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 111 - 196
Target Start/End: Original strand, 1063509 - 1063593
Alignment:
Q  111 ttgcgatcttgctatccccttttcgattctacaaaatcaatgcagtagaatactttgattttggttgcaattttaggttttgcgat 196  Q
    |||||||||||||||| ||||| | ||||||||||||||||  |||||||| | || ||||||||||| |||||||||||||||||    
T  1063509 ttgcgatcttgctatcgccttt-caattctacaaaatcaattgagtagaatccattaattttggttgcgattttaggttttgcgat 1063593  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 103 - 231
Target Start/End: Original strand, 9323949 - 9324075
Alignment:
Q  103 cttcgattttgcgatcttgctatccccttttcgattctacaaaatca-atgcagtagaatactttgattttggttgcaattttaggttttgcgatcttgc 201  Q
    |||||||||||||||||| ||||| |||| | ||||||||| ||||  ||| |||||||| ||||||||||| |||| ||||||||| ||| ||||||||    
T  9323949 cttcgattttgcgatcttactatcaccttct-gattctacacaatctcatg-agtagaatcctttgattttgattgcgattttaggtgttgtgatcttgc 9324046  T
Q  202 tattatcttttcgatatgaagcaaaatctc 231  Q
    ||| | | ||||||| ||||||||||||||    
T  9324047 tatca-cctttcgatctgaagcaaaatctc 9324075  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 9371368 - 9371209
Alignment:
Q  17 taagatttcaaactttaa-gtagtgtatgcactttgtagttgatatttaatattatttaagtagaatgcttcgattttggtcgcgatcttcgattttgcg 115  Q
    |||||||||||||||||| ||||  || ||||||| ||||  | | ||||||||||||||||||||| ||| ||||||||| | |||| || ||||| |     
T  9371368 taagatttcaaactttaaagtagcttacgcactttatagtataaaattaatattatttaagtagaattctttgattttggttgagatcctccattttaca 9371269  T
Q  116 atcttgctatccccttttcgattctacaaaatcaatgcagtagaatactttgattttggtt 176  Q
    |||||| |||  || ||||||||| ||||||| |||  |||||||| |||| |||||||||    
T  9371268 atcttgttatttcc-tttcgattcgacaaaattaattgagtagaatcctttaattttggtt 9371209  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 235
Target Start/End: Complemental strand, 40965530 - 40965366
Alignment:
Q  69 tatttaagtagaatgcttcgattttggtcgcgatcttcgattttgcgatcttgctatccccttttcgattctacaaaa-tcaatgcagtagaatactttg 167  Q
    ||||| |||||||| |||| ||||||||  |||||||||||||||| |||| ||||| | ||||| |||||||||||| | |||  | |||||| ||| |    
T  40965530 tatttgagtagaatacttcaattttggttacgatcttcgattttgcaatctagctat-ctctttttgattctacaaaattaaatttattagaattcttcg 40965432  T
Q  168 attttggttgcaattttaggttttgcgatcttgctattatcttttcgatatgaagcaaaatctcaatt 235  Q
    ||||||||| | |||||||| || |   |||||||||  |||||| ||| ||||||||||||||||||    
T  40965431 attttggttacgattttagg-ttagatttcttgctatcctctttt-gatttgaagcaaaatctcaatt 40965366  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 211
Target Start/End: Complemental strand, 43741890 - 43741747
Alignment:
Q  62 ttaatattatttaagtagaatgcttcgattttggtcgcgatcttcgattttgcgatcttgctatccccttttcgattctacaaaatcaatgcagtagaat 161  Q
    |||||||||||| |||||||| |||| || || || || |||||| ||||||||||||| |||||| | |||| |||||     ||||||  ||||||||    
T  43741890 ttaatattatttgagtagaatccttcaatcttagttgcaatcttcaattttgcgatctttctatccac-tttcaattct-----atcaatttagtagaat 43741797  T
Q  162 actttgattttggttgcaattttaggttttgcgatcttgctattatcttt 211  Q
     |||| ||||||||||| ||||||| ||||| ||  |||||||| |||||    
T  43741796 cctttaattttggttgcgattttagattttgtgagtttgctattctcttt 43741747  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 204
Target Start/End: Complemental strand, 11321044 - 11320955
Alignment:
Q  114 cgatcttgctatccccttttcgattctacaaaatcaatgcagtagaatactttgattttggttgcaattttaggttttgcgatcttgctat 204  Q
    ||||||||||||| |||||  |||||| ||||||||||  |||| ||| |||| ||||||||||  |||||||||||||| ||||| ||||    
T  11321044 cgatcttgctatcacctttg-gattcttcaaaatcaattgagtaaaatccttttattttggttgtgattttaggttttgcaatcttactat 11320955  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 3696793 - 3696699
Alignment:
Q  109 ttttgcgatcttgctatccccttttcgattctacaaaatcaatgcagtagaatactttgattttggttgcaattttaggttttgcgatcttgctat 204  Q
    |||| |||||||||||||| |||||  |||||||||||| |||  |||||||| || | ||||||||||  || ||| ||||| ||||||||||||    
T  3696793 ttttacgatcttgctatccactttta-attctacaaaattaattgagtagaatcctataattttggttgtgatcttatgttttacgatcttgctat 3696699  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 11434141 - 11434223
Alignment:
Q  41 tatgcactttgtagttgatatttaatattatttaagtagaatgcttcgattttggtcgcgatcttcgattttgcgatcttgct 123  Q
    |||||||||| ||||  ||||||||||| || | |||||||| | | ||||||| | | |||||||||||||| |||||||||    
T  11434141 tatgcactttatagtatatatttaatataatgttagtagaattcattgattttgattgtgatcttcgattttgggatcttgct 11434223  T

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