View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_12 (Length: 438)
Name: NF8661_low_12
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 14 - 422
Target Start/End: Complemental strand, 50243643 - 50243234
Alignment:
| Q |
14 |
cacacacgcatcaatcctcaattttccattcagcttaagaaagaaaaataaaatccaacctgcaacgaaaatagctatgacaataagaagctcctcaaaa |
113 |
Q |
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| T |
50243643 |
cacacacgcatcaatcctcaattttccattcagcttaagaaagaaaaataaaatccaacctgcaacgaaaatagctatgacaataagaagctcctcaaaa |
50243544 |
T |
|
| Q |
114 |
gctccaccaactaaaactgataatcgtgcaatccctatagcaagcactcctgctgaaattgttcccaaagcacgattgaaccctttgttaagggttgcac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50243543 |
gctccaccaactaaaactgataatcgtgcaatccctatagcaagcactcctgctgaaattgttcccaaagcacgattgaaccctttgttaagggttgcac |
50243444 |
T |
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| Q |
214 |
ctaatctcagaaagnnnnnnnngttaactttttcattaaacaaagacatatttc---aaaacnnnnnnnnnngaaattcacatagtatttcgttgtctgt |
310 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| |
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| T |
50243443 |
ctaatctcagaaagaaaaaaaagttaactttttcattaaacaaagac--atttcaaaaaaaaaaaaaagaaagaaattcacatagtatttcgttgtctgt |
50243346 |
T |
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| Q |
311 |
cacaacaataataataagtaacaactatatcgccccgacacttgagattgaaagcatgttcaatgtctaacatgtgtaggtgtatgtgacattggcacaa |
410 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50243345 |
cacaacaataataataagtaacaactatatcggcccgacacttgagattgaaaacatgttcaatgtctaacatgtgtaggtgtatgtgacattggcacaa |
50243246 |
T |
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| Q |
411 |
caccgacatagt |
422 |
Q |
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| T |
50243245 |
caccgacatagt |
50243234 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 383
Target Start/End: Original strand, 3963719 - 3963755
Alignment:
| Q |
347 |
gacacttgagattgaaagcatgttcaatgtctaacat |
383 |
Q |
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| T |
3963719 |
gacactttagattgaaggcatgttcaatgtctaacat |
3963755 |
T |
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