View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_13 (Length: 412)
Name: NF8661_low_13
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 14 - 393
Target Start/End: Original strand, 14202830 - 14203207
Alignment:
| Q |
14 |
tcgtgttgttgtttttcacaagcaccatcccatccccatttcccttcttcaaacaaggttgcatcgcacataacc----agaggtgaacctgacacatct |
109 |
Q |
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| T |
14202830 |
tcgtgttgttgttttccacaagcaccatctcatccccatttcccttcttcaaataaggttgcatcgcacataaccgttaagaggtgaacctgacacatct |
14202929 |
T |
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| Q |
110 |
gacttctctcgatagtggtgatgattggccttcaagtgttgaaccgttgtcaatagtaaccttattctccaatggatgggagtgtgtatactatgcatgt |
209 |
Q |
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| T |
14202930 |
gacttctctcgatagtggtgatggttggtcttcaagtgttgaaccgtcgtcaatagtaaccttattctctaatggatgggagtgtgtat-----gcatgt |
14203024 |
T |
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| Q |
210 |
acaaactcagacagtacaagtcagtaatcgtcatgcgtgatataggtatctaagataaaaagtgagtgtagctggagcaataccatgagatagtatttat |
309 |
Q |
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| T |
14203025 |
acaaactcagacagtacaagtcagtaat-gtcatgcgtgatataggtatctaggataaaaagtgagtgtagctggagcaataccatgagatagtatttat |
14203123 |
T |
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| Q |
310 |
ataataggcttagaattttgtctcttgaactgttactcagatagttatctctaaggacactcgaaacagttcagatcctatcat |
393 |
Q |
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| T |
14203124 |
atagtaggcttagagttttgtctcttgaactgttaccaagatagctatctctaaggacactcgaaacaatccagatcctatcat |
14203207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 21892791 - 21892857
Alignment:
| Q |
262 |
agataaaaagtgagtgtagctggagcaataccatgagatagtatttatataataggcttagaatttt |
328 |
Q |
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| T |
21892791 |
agataaaaagtgaatgtacctggatcaataccatgagttaatatttatagaataggtttaggatttt |
21892857 |
T |
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