View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8661_low_14 (Length: 404)
Name: NF8661_low_14
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 39138934 - 39139211
Alignment:
| Q |
14 |
tcaagatcatagagtaggtagtggtggctgtgacatgatcagcagaaaaagtggcggcataggggatgatgatgatgataaaacagatgtgaagtgaagt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39138934 |
tcaagatcatagagtaggtagtggtggctgtgacgtgatcagcagaaaaagtggcggcataggtgatgatgatgatgataaaacagatgtgaagtgaagt |
39139033 |
T |
|
| Q |
114 |
aaagaagctgggtgtgtaatagtgtacatgaatgtgcattaatttacctagcacatcaagaattaaaggtggttgttgagcaacgagccacacttgtgtt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39139034 |
aaagaagctgggtgtgtaatagtgtacatgaatgtgcattaatttacctagcacatcaagaattaaaggtggttgttgagcaacgagccacacttgtgtt |
39139133 |
T |
|
| Q |
214 |
ctcttttcatagtgctctctgctctgctcacaagacccaccatctttgaacctcttgctgctcgctgctcactaccaa |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39139134 |
ctcttttcatagtgctctctgctctgctcacaagacccaccatctttgaacctcttgctgctcgctgctcactaccaa |
39139211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University