View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_15 (Length: 403)
Name: NF8661_low_15
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 397
Target Start/End: Complemental strand, 4339760 - 4339380
Alignment:
| Q |
17 |
agttaatagaatgcttacagaaaatgatcccaagagtctatcacgtgctaagacctcagcagtcttcacccatatctgtagagaaatatttaaacttagt |
116 |
Q |
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| T |
4339760 |
agttaatagaatgcttacagaaaatgatcccaagagtctatcacgtgctaagacctcagcagtcttcacccatatctgtagagaaatatttaaacttagt |
4339661 |
T |
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| Q |
117 |
agcaaaaataaacataatttagactaagacttgttctcatgacttaaatattccattagtaaaatacaattttattacaccttccaaaacaaaaggaaga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4339660 |
agcaaaaataaacataatttagactaagacttgttctcatgacttaaatattccattagtaaaatacaattttattacaccttccaaaacaaaaggaaga |
4339561 |
T |
|
| Q |
217 |
gaactcatgcagaggcatttgcacttaaatcacacgacagcacaagcacgttatcatctgctatacagtgcaaatggatcccgaaaaggcaaatagtaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4339560 |
gaactcatgcagaggcatttgcacttaaatcacacgacagcacaagcacgttatcatctgctatacagtgcaaatggatcccgaaaaggcaaatagtaat |
4339461 |
T |
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| Q |
317 |
tgcatgacaaaaggaaggtctaaaccatctgattttgatcaataatttataatgttctttatttatttactgaactccaaa |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4339460 |
tgcatgacaaaaggaaggtctaaaccatctgattttgatcaataatttataatgttctttatttatttactgaacttcaaa |
4339380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 386
Target Start/End: Original strand, 34863673 - 34863720
Alignment:
| Q |
339 |
aaccatctgattttgatcaataatttataatgttctttatttatttac |
386 |
Q |
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| T |
34863673 |
aaccatcggattttgatcaataatttataatgttttgtacttatttac |
34863720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 386
Target Start/End: Original strand, 34863908 - 34863955
Alignment:
| Q |
339 |
aaccatctgattttgatcaataatttataatgttctttatttatttac |
386 |
Q |
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||||||| |||||||||||||||||||||||||| | || |||||||| |
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| T |
34863908 |
aaccatcggattttgatcaataatttataatgttttgtacttatttac |
34863955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 386
Target Start/End: Original strand, 34864143 - 34864190
Alignment:
| Q |
339 |
aaccatctgattttgatcaataatttataatgttctttatttatttac |
386 |
Q |
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||||||| |||||||||||||||||||||||||| | || |||||||| |
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| T |
34864143 |
aaccatcggattttgatcaataatttataatgttttgtacttatttac |
34864190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 386
Target Start/End: Original strand, 34864378 - 34864425
Alignment:
| Q |
339 |
aaccatctgattttgatcaataatttataatgttctttatttatttac |
386 |
Q |
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||||||| |||||||||||||||||||||||||| | || |||||||| |
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| T |
34864378 |
aaccatcggattttgatcaataatttataatgttttgtacttatttac |
34864425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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