View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_16 (Length: 383)
Name: NF8661_low_16
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 61 - 360
Target Start/End: Complemental strand, 2389741 - 2389442
Alignment:
| Q |
61 |
attaaaggacaattgatgaatcgcatccaagagagtagaaattgcagaagcatgtagctagataccccagttcctatacagtaacatgtatatttcatgt |
160 |
Q |
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| T |
2389741 |
attaaaggacaattgatgaatcgcatccaagagagtagaaattccagaagcatgtagctagataccccagttcctatacagtaacatgtatatttcatgt |
2389642 |
T |
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| Q |
161 |
atcttgagaattgagattgttggataacaatgttttatgtactaaattattttattcagcttcgagtttcgcctaagggtctgtttggcagcagatggcc |
260 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2389641 |
atcttgagaattgagattgttggatgacaatgttttatgtactaaattattttattcagcttcgagtttcgcctaagggtctgtttggcagcagatggcc |
2389542 |
T |
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| Q |
261 |
gtctgaatatgatatctcgcatccggaatgtcaatggcaagcctttcagtttctcctttgcatttcatacatatttctccatatctgatatcaggtctgt |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
2389541 |
gtctgaatatgatatctcgcatccggaatgtcaatggcaagcctttcagtttctcctttgcatttcatacatatttctcgatatccgatatcaggtctgt |
2389442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 41
Target Start/End: Complemental strand, 2389789 - 2389759
Alignment:
| Q |
11 |
tgagaagaataaccgagataaattgagaggc |
41 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2389789 |
tgagaagaataaccgagataaattgagaggc |
2389759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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