View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8661_low_18 (Length: 353)

Name: NF8661_low_18
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8661_low_18
NF8661_low_18
[»] chr2 (4 HSPs)
chr2 (18-353)||(17461381-17461716)
chr2 (132-342)||(17455422-17455632)
chr2 (30-73)||(17455171-17455214)
chr2 (197-342)||(17804742-17804887)
[»] chr4 (2 HSPs)
chr4 (131-353)||(52142814-52143036)
chr4 (30-68)||(52143069-52143107)


Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 17461716 - 17461381
Alignment:
Q  18 aatcagatgtctcaagaacagcattgttgagctctccatcacttgaccttggtcattggttggtccatttgaccttggaaaggttttagctctgatctat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17461716 aatcagatgtctcaagaacagcattgttgagctctccatcacttgaccttggtcattggttggtccatttgaccttggaaaggttttagctctgatctat 17461617  T
Q  118 ttttctccttaacttccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaagaaagcatgcaatttatatgagaagaatat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17461616 ttttctccttaacttccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaagaaagcatgcaatttatatgagaagaatat 17461517  T
Q  218 ggggacagtcagtgccatggttgcaatggtaaatatgctttgaagaacgatgtacatcagcaagcgattttcatcgccaagcaacccacttaagcgccac 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  17461516 ggggacagtcagtgccatggttgcaatggtaaatatgctttgaagaacgatgtacatcagcaagcgattttgatccccaagcaacccacttaagcgccac 17461417  T
Q  318 catacattgtttgctttctgagcttgtttggagagt 353  Q
    ||||||||||||||||||| ||||| ||| ||||||    
T  17461416 catacattgtttgctttcttagctttttttgagagt 17461381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 132 - 342
Target Start/End: Original strand, 17455422 - 17455632
Alignment:
Q  132 tccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaagaaagcatgcaatttatatgagaagaatatggggacagtcagtg 231  Q
    |||||||||||||||||| | |||||||||||||||| |||||||||||||| |||||  |||||||||| | |||| ||||||||||||||||||||||    
T  17455422 tccaacagaaaacttcctccattccatactgatacagaaagcttaattattttgaagagtgcatgcaattcaaatgacaagaatatggggacagtcagtg 17455521  T
Q  232 ccatggttgcaatggtaaatatgctttgaagaacgatgtacatcagcaagcgattttcatcgccaagcaacccacttaagcgccaccatacattgtttgc 331  Q
    |||| ||| ||||||||||||| | |||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||    
T  17455522 ccattgttacaatggtaaatattccttgaagaacgatgtacatcagcaagcgattttgatccccaagcaacccacttaagtgccaccatacattgtttgc 17455621  T
Q  332 tttctgagctt 342  Q
    ||||| |||||    
T  17455622 tttcttagctt 17455632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 17455171 - 17455214
Alignment:
Q  30 caagaacagcattgttgagctctccatcacttgaccttggtcat 73  Q
    |||||||||||||||||| ||||||||||||||| |||||||||    
T  17455171 caagaacagcattgttgaactctccatcacttgatcttggtcat 17455214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 342
Target Start/End: Original strand, 17804742 - 17804887
Alignment:
Q  197 caatttatatgagaagaatatggggacagtcagtgccatggttgcaatggtaaatatgctttgaagaacgatgtacatcagcaagcgattttcatcgcca 296  Q
    ||||||||| || || ||||| || |||||||| ||||| ||||| |  ||||| || | ||| ||||  ||| |||| | |||||| ||||  || ||     
T  17804742 caatttataggacaaaaatatcggaacagtcagcgccatcgttgccaccgtaaacattccttgcagaagaatgaacattaacaagcggttttggtccccg 17804841  T
Q  297 agcaacccacttaagcgccaccatacattgtttgctttctgagctt 342  Q
    ||||| ||||||||||||||||| |  || ||||||||||||||||    
T  17804842 agcaagccacttaagcgccaccacatgttatttgctttctgagctt 17804887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 131 - 353
Target Start/End: Complemental strand, 52143036 - 52142814
Alignment:
Q  131 ttccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaagaaagcatgcaatttatatgagaagaatatggggacagtcagt 230  Q
    ||||||||| ||||||||  |||||||||||||  ||| || ||||| |||||||||||   ||||||||| |||||| | |||||||||||||| ||||    
T  52143036 ttccaacaggaaacttccaccgttccatactgaagcagaaaccttaagtatttggaagattacatgcaattcatatgacaggaatatggggacagccagt 52142937  T
Q  231 gccatggttgcaatggtaaatatgctttgaagaacgatgtacatcagcaagcgattttcatcgccaagcaacccacttaagcgccaccatacattgtttg 330  Q
    ||||||||||||||||||||||||| ||| ||||  |||||||| |||| |||||||| ||| ||||  | |||||||| ||||||||||| ||||||||    
T  52142936 gccatggttgcaatggtaaatatgccttgtagaaaaatgtacattagcatgcgattttgatccccaaatagcccacttaggcgccaccatatattgtttg 52142837  T
Q  331 ctttctgagcttgtttggagagt 353  Q
    |||||| ||||| ||| ||||||    
T  52142836 ctttcttagctttttttgagagt 52142814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 52143107 - 52143069
Alignment:
Q  30 caagaacagcattgttgagctctccatcacttgaccttg 68  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  52143107 caagaacagcattgttgagctctccgttacttgaccttg 52143069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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