View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_19 (Length: 344)
Name: NF8661_low_19
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 93 - 318
Target Start/End: Complemental strand, 8574601 - 8574376
Alignment:
| Q |
93 |
ccgttcttataacagatgaacttcagatttggaacctcgcgtggcaaatatgcatgaaattgtagcagttaaggatctcacagagatagaaaatttggta |
192 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8574601 |
ccgttcttataacagatgaacttcagagttggaacctcacgtggcaaatatgcatgaaattgtagcagttagggatctcacagagatagaaaatttggta |
8574502 |
T |
|
| Q |
193 |
atatgacattctatgattagcatttctaattaagagtaactgaaaattgtggacaacttcaacaggtgtctcacgagacgagagattagtacttgaaaat |
292 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8574501 |
atatgacattctatgattagcatttcaaattaagagtaactgaaaattgtggacaacttcaacaggtgtctcacgagacaagagattagtacttgaaaat |
8574402 |
T |
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| Q |
293 |
tgttcgaaatttcaatcccattcttg |
318 |
Q |
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|||||||||||||||||||||||||| |
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| T |
8574401 |
tgttcgaaatttcaatcccattcttg |
8574376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 93 - 318
Target Start/End: Complemental strand, 8548251 - 8548026
Alignment:
| Q |
93 |
ccgttcttataacagatgaacttcagatttggaacctcgcgtggcaaatatgcatgaaattgtagcagttaaggatctcacagagatagaaaatttggta |
192 |
Q |
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||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8548251 |
ccgttcttataacagatgaacttcaaatttggaacctcacgtgacaaatatgcatgaaattgtagcagttagggatctcacagagatagaaaatttggta |
8548152 |
T |
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| Q |
193 |
atatgacattctatgattagcatttctaattaagagtaactgaaaattgtggacaacttcaacaggtgtctcacgagacgagagattagtacttgaaaat |
292 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8548151 |
atatgacattctatgattagcatttcaaattaagagtaactgaaaattgtggacaacttcaacaggtgtctcacaagacgagagattagtacttgaaaat |
8548052 |
T |
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| Q |
293 |
tgttcgaaatttcaatcccattcttg |
318 |
Q |
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|||||||||||||||||||||||||| |
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| T |
8548051 |
tgttcgaaatttcaatcccattcttg |
8548026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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