View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_20 (Length: 341)
Name: NF8661_low_20
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 15775974 - 15775710
Alignment:
| Q |
1 |
ggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacagaggtagaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15775974 |
ggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacagaggtagaag |
15775875 |
T |
|
| Q |
101 |
taagttgactgggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactgacttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15775874 |
taagttgactgggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactgacttg |
15775775 |
T |
|
| Q |
201 |
acgtcatcttagtttgaaaggtggaaactggccaaactgcactggctcacaaggtaacaggggtg |
265 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15775774 |
acgtcatcttagtttgaaaggtggaaactggccaaactgcactggctcacaaggtaacaggggtg |
15775710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 111 - 260
Target Start/End: Complemental strand, 15776032 - 15775884
Alignment:
| Q |
111 |
gggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggaga-ttgaaataagaatttgaaactgacttgacgtcatct |
209 |
Q |
| |
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||||||| ||||||||||| |||||||||||||||||| |||||| |||| ||||||||| || ||| ||| || || || |||||||||||| || |
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| T |
15776032 |
gggacaaactgttcttggattgaactagccacttatccaaacatggatggaaatcactggggatttgtaatggga--ttagaattgacttgacgtcgtcc |
15775935 |
T |
|
| Q |
210 |
tagtttgaaaggtggaaactggccaaactgcactggctcacaaggtaacag |
260 |
Q |
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| |||||||||| | || |||||||||||||| |||||||| | |||||| |
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| T |
15775934 |
tgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacag |
15775884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 24813136 - 24813400
Alignment:
| Q |
1 |
ggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacagaggtagaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24813136 |
ggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacagaggtagaag |
24813235 |
T |
|
| Q |
101 |
taagttgactgggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactgacttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24813236 |
taagttgactgggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactgacttg |
24813335 |
T |
|
| Q |
201 |
acgtcatcttagtttgaaaggtggaaactggccaaactgcactggctcacaaggtaacaggggtg |
265 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
24813336 |
acgtcatcttagtttgaaaggtggaaagtggccaaactgcactggctcacaaggtaacaggggtg |
24813400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 260
Target Start/End: Original strand, 24813078 - 24813226
Alignment:
| Q |
111 |
gggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggaga-ttgaaataagaatttgaaactgacttgacgtcatct |
209 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||| || ||| ||| || || || |||||||||||| || |
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| T |
24813078 |
gggacaagctgttcttggattgaactagccacttatccaaacatggatggaaatcactggggatttgtaatggga--ttagaattgacttgacgtcgtcc |
24813175 |
T |
|
| Q |
210 |
tagtttgaaaggtggaaactggccaaactgcactggctcacaaggtaacag |
260 |
Q |
| |
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| |||||||||| | || |||||||||||||| |||||||| | |||||| |
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|
| T |
24813176 |
tgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacag |
24813226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 13178091 - 13178355
Alignment:
| Q |
1 |
ggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacagaggtagaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13178091 |
ggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacagaggtagaag |
13178190 |
T |
|
| Q |
101 |
taagttgactgggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactgacttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13178191 |
taagttgactgggacaagctgttcttgaactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactgacttg |
13178290 |
T |
|
| Q |
201 |
acgtcatcttagtttgaaaggtggaaactggccaaactgcactggctcacaaggtaacaggggtg |
265 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13178291 |
acatcatcttagtttgaaaggtggaaactggccaaactgcactggctcacaaggtaacaggggtg |
13178355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 260
Target Start/End: Original strand, 13178033 - 13178181
Alignment:
| Q |
111 |
gggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggaga-ttgaaataagaatttgaaactgacttgacgtcatct |
209 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||| || ||| ||| || || || |||||||||||| || |
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| T |
13178033 |
gggacaagctgttcttggattgaactagccacttatccaaacatggatggaaatcactggggatttgtaatggga--ttagaattgacttgacgtcgtcc |
13178130 |
T |
|
| Q |
210 |
tagtttgaaaggtggaaactggccaaactgcactggctcacaaggtaacag |
260 |
Q |
| |
|
| |||||||||| | || |||||||||||||| |||||||| | |||||| |
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|
| T |
13178131 |
tgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacag |
13178181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 3791136 - 3790872
Alignment:
| Q |
1 |
ggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacagaggtagaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
3791136 |
ggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcataggataacagaggtagaag |
3791037 |
T |
|
| Q |
101 |
taagttgactgggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactgacttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3791036 |
taagttgactgggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactgacttg |
3790937 |
T |
|
| Q |
201 |
acgtcatcttagtttgaaaggtggaaactggccaaactgcactggctcacaaggtaacaggggtg |
265 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3790936 |
acgtcatcttagtttgaaaggtggaacctggccaaactgcactggctcacaaggtaacaggggtg |
3790872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 3791194 - 3791130
Alignment:
| Q |
111 |
gggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagatt |
175 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||| |||| |
|
|
| T |
3791194 |
gggacaagctgttcttggattgaactagccacttatccaaacatggatggaaatcactggggatt |
3791130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 111 - 265
Target Start/End: Complemental strand, 3452655 - 3452501
Alignment:
| Q |
111 |
gggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactgacttgacgtcatctt |
210 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3452655 |
gggacaagctgttcttggattgaactagccacttatccaaacatggatggaaatcactggggattgaaataagaatttgaaactgacttgacgtcatctt |
3452556 |
T |
|
| Q |
211 |
agtttgaaaggtggaaactggccaaactgcactggctcacaaggtaacaggggtg |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3452555 |
agtttgaaaggtggaaactggccaaactgcactggctcacaaggtaacaggggtg |
3452501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 114 - 265
Target Start/End: Original strand, 26267899 - 26268050
Alignment:
| Q |
114 |
acaagctgttcttggact-gaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactgacttgacgtcatcttag |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||| | | | ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26267899 |
acaagctgttcttggacttgaactagccacttgaccgaaca-gaaacatattcactggggattgaaataagaatttgaaactgacttgacgtcatcttag |
26267997 |
T |
|
| Q |
213 |
tttgaaaggtggaaactggccaaactgcactggctcacaaggtaacaggggtg |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26267998 |
tttgaaaggtggaaactggccaaactgcactggctcacaaggtaataggggtg |
26268050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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