View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8661_low_22 (Length: 327)

Name: NF8661_low_22
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8661_low_22
NF8661_low_22
[»] chr6 (12 HSPs)
chr6 (1-313)||(1442091-1442403)
chr6 (181-308)||(176270-176397)
chr6 (181-294)||(1470925-1471038)
chr6 (103-170)||(370920-370987)
chr6 (99-170)||(1459676-1459747)
chr6 (251-308)||(7564739-7564796)
chr6 (251-299)||(370782-370830)
chr6 (99-170)||(1471058-1471129)
chr6 (99-170)||(7564886-7564957)
chr6 (181-294)||(1459543-1459656)
chr6 (241-294)||(1453842-1453895)
chr6 (241-294)||(1465534-1465587)
[»] chr4 (3 HSPs)
chr4 (183-294)||(55419720-55419831)
chr4 (251-301)||(20019767-20019817)
chr4 (257-301)||(20016180-20016224)
[»] chr7 (2 HSPs)
chr7 (251-294)||(3927065-3927108)
chr7 (103-155)||(3926908-3926960)
[»] chr3 (12 HSPs)
chr3 (255-301)||(2442049-2442095)
chr3 (251-296)||(9608344-9608389)
chr3 (251-294)||(2456255-2456298)
chr3 (251-294)||(3754606-3754649)
chr3 (255-306)||(4142124-4142175)
chr3 (251-301)||(968677-968727)
chr3 (255-301)||(4157939-4157985)
chr3 (251-300)||(997582-997631)
chr3 (251-300)||(1013972-1014021)
chr3 (255-296)||(13498234-13498275)
chr3 (255-292)||(44001605-44001642)
chr3 (251-303)||(803211-803263)
[»] chr5 (5 HSPs)
chr5 (255-296)||(20293005-20293046)
chr5 (255-296)||(20305866-20305907)
chr5 (255-296)||(20310270-20310311)
chr5 (251-294)||(11081819-11081862)
chr5 (255-296)||(20301453-20301494)
[»] chr2 (2 HSPs)
chr2 (255-304)||(6538844-6538893)
chr2 (245-304)||(20538018-20538077)
[»] scaffold0044 (1 HSPs)
scaffold0044 (251-294)||(89149-89192)


Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 1442403 - 1442091
Alignment:
Q  1 agacttcccttctgaaatcatggatgtagccgattggtgtcatgggatatttttaagtggcaccattaattgggccatacggcgagatcaaagaaaacac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1442403 agacttcccttctgaaatcatggatgtagccgattggtgtcatgggatatttttaagtggcaccattaattgggccatacggtgagatcaaagaaaacac 1442304  T
Q  101 tcttcatggattattctctctcttgatttagaaaaagagtcttatcaagagattttgctgcctgattatgctcccccatttaacttgagcttgggggttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  1442303 tcttcatggattattctctctcttgatttagaaaaagagtcttatcaagagattttgttgcctgattatgctcctccatttaacttgagcttgggggttt 1442204  T
Q  201 ccaatgattgcttatgcatccttgctcaaaacggagctattttggatacatgggttatgaaggattatggaattaaagattcttggactaaattattcac 300  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1442203 ccaatgattgcttatgcatccttgctcaaaacggaactattttggatacatgggttatgaaggattatggaattaaagattcttggactaaattgttcac 1442104  T
Q  301 tgttccatctctg 313  Q
    |||||||||||||    
T  1442103 tgttccatctctg 1442091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 181 - 308
Target Start/End: Original strand, 176270 - 176397
Alignment:
Q  181 taacttgagcttgggggtttccaatgattgcttatgcatccttgctcaaaacggagctattttggatacatgggttatgaaggattatggaattaaagat 280  Q
    |||||| |||||||||||||| |  |||||| ||||| |||||||||| | || | || |||||||||  |||  |||||| |||||||||| |||||||    
T  176270 taacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaatgattatggaaataaagat 176369  T
Q  281 tcttggactaaattattcactgttccat 308  Q
    |||||||||||||| |||||| ||||||    
T  176370 tcttggactaaattgttcactcttccat 176397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 294
Target Start/End: Complemental strand, 1471038 - 1470925
Alignment:
Q  181 taacttgagcttgggggtttccaatgattgcttatgcatccttgctcaaaacggagctattttggatacatgggttatgaaggattatggaattaaagat 280  Q
    |||||| |||||||||||||| |  |||| |||||||||||||||||| | |  | || |||||||||  ||||||||||| |||||||||| |||||||    
T  1471038 taactttagcttgggggtttctagggattacttatgcatccttgctcataccaaatcttttttggatatttgggttatgaaagattatggaaataaagat 1470939  T
Q  281 tcttggactaaatt 294  Q
    |||||| |||||||    
T  1470938 tcttggtctaaatt 1470925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 370987 - 370920
Alignment:
Q  103 ttcatggattattctctctcttgatttagaaaaagagtcttatcaagagattttgctgcctgattatg 170  Q
    ||||||| | ||||| |||||||||||||||||||||| |||||||||||||| || |||||||||||    
T  370987 ttcatgggtcattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatg 370920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 1459747 - 1459676
Alignment:
Q  99 actcttcatggattattctctctcttgatttagaaaaagagtcttatcaagagattttgctgcctgattatg 170  Q
    |||||||| || | ||||| ||||||||||||| ||| |||||||||||||||||||||| |||| ||||||    
T  1459747 actcttcacgggtcattctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatg 1459676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 7564796 - 7564739
Alignment:
Q  251 tgggttatgaaggattatggaattaaagattcttggactaaattattcactgttccat 308  Q
    ||||||||||||||||||||||  || ||||||||||||||||| |||| ||||||||    
T  7564796 tgggttatgaaggattatggaaacaaggattcttggactaaattgttcagtgttccat 7564739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 370830 - 370782
Alignment:
Q  251 tgggttatgaaggattatggaattaaagattcttggactaaattattca 299  Q
    |||||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  370830 tgggttatgaagaattatggaaataaagattcttggactaaattgttca 370782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 1471129 - 1471058
Alignment:
Q  99 actcttcatggattattctctctcttgatttagaaaaagagtcttatcaagagattttgctgcctgattatg 170  Q
    |||||||| || | ||||| |||||| |||||| ||| |||||||||||||||||||| | |||||||||||    
T  1471129 actcttcacgggtcattctttctcttaatttaggaaacgagtcttatcaagagattttacagcctgattatg 1471058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 7564957 - 7564886
Alignment:
Q  99 actcttcatggattattctctctcttgatttagaaaaagagtcttatcaagagattttgctgcctgattatg 170  Q
    ||||||||||| | ||||| || ||||||||||  || |||||||||||||||||||||| ||| |||||||    
T  7564957 actcttcatgggtcattctttcccttgatttaggtaacgagtcttatcaagagattttgcagccagattatg 7564886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 294
Target Start/End: Complemental strand, 1459656 - 1459543
Alignment:
Q  181 taacttgagcttgggggtttccaatgattgcttatgcatccttgctcaaaacggagctattttggatacatgggttatgaaggattatggaattaaagat 280  Q
    |||||| |||||||||||||  |  |||| ||||||| |||||||||| |    | || |||||||||  ||||||||||| |||| ||||| ||||||     
T  1459656 taactttagcttgggggtttatagggattacttatgcgtccttgctcatacaaaatcttttttggatatttgggttatgaaagattttggaaataaagaa 1459557  T
Q  281 tcttggactaaatt 294  Q
    ||||||||||||||    
T  1459556 tcttggactaaatt 1459543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 1453895 - 1453842
Alignment:
Q  241 tttggatacatgggttatgaaggattatggaattaaagattcttggactaaatt 294  Q
    ||||||||  |||||||||||| ||||||||| |||||| ||||||| ||||||    
T  1453895 tttggatatctgggttatgaagtattatggaaataaagactcttggaataaatt 1453842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 1465587 - 1465534
Alignment:
Q  241 tttggatacatgggttatgaaggattatggaattaaagattcttggactaaatt 294  Q
    ||||||||  |||||||||||| ||||||||| |||||| ||||||| ||||||    
T  1465587 tttggatatctgggttatgaagtattatggaaataaagactcttggaataaatt 1465534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 294
Target Start/End: Original strand, 55419720 - 55419831
Alignment:
Q  183 acttgagcttgggggtttccaatgattgcttatgcatccttgctcaaaacggagctattttggatacatgggttatgaaggattatggaattaaagattc 282  Q
    |||||| |||| | |||||||| |||||||||||| || ||||||| | |    || |||||||||  ||| ||||||||| |||||||| |||||||||    
T  55419720 acttgaacttgagtgtttccaaggattgcttatgcgtcgttgctcacaccaattcttttttggatatctggcttatgaaggtttatggaaataaagattc 55419819  T
Q  283 ttggactaaatt 294  Q
    ||||||||||||    
T  55419820 ttggactaaatt 55419831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 20019817 - 20019767
Alignment:
Q  251 tgggttatgaaggattatggaattaaagattcttggactaaattattcact 301  Q
    ||||| |||||||| ||||||||| |||| |||||||||||||| ||||||    
T  20019817 tgggtcatgaaggaatatggaattcaagagtcttggactaaattgttcact 20019767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 20016224 - 20016180
Alignment:
Q  257 atgaaggattatggaattaaagattcttggactaaattattcact 301  Q
    |||||||| ||||||||| |||| |||||||||||||| ||||||    
T  20016224 atgaaggaatatggaattcaagagtcttggactaaattgttcact 20016180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 3927065 - 3927108
Alignment:
Q  251 tgggttatgaaggattatggaattaaagattcttggactaaatt 294  Q
    |||||||||||||||||||||| |||| ||||||||||||||||    
T  3927065 tgggttatgaaggattatggaaataaaaattcttggactaaatt 3927108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 3926908 - 3926960
Alignment:
Q  103 ttcatggattattctctctcttgatttagaaaaagagtcttatcaagagattt 155  Q
    ||||||| | ||||| ||||||||||||| ||| ||||| |||||||||||||    
T  3926908 ttcatgggtcattctttctcttgatttaggaaacgagtcctatcaagagattt 3926960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 2442049 - 2442095
Alignment:
Q  255 ttatgaaggattatggaattaaagattcttggactaaattattcact 301  Q
    |||||||||| ||||||| ||||||||||||||||||||| ||||||    
T  2442049 ttatgaaggagtatggaaataaagattcttggactaaattgttcact 2442095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 296
Target Start/End: Complemental strand, 9608389 - 9608344
Alignment:
Q  251 tgggttatgaaggattatggaattaaagattcttggactaaattat 296  Q
    |||||||||||||| ||||||| || ||||||||||||||||||||    
T  9608389 tgggttatgaaggaatatggaaatatagattcttggactaaattat 9608344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 2456255 - 2456298
Alignment:
Q  251 tgggttatgaaggattatggaattaaagattcttggactaaatt 294  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||    
T  2456255 tgggttatgaaggaatatggaaataaagactcttggactaaatt 2456298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 3754606 - 3754649
Alignment:
Q  251 tgggttatgaaggattatggaattaaagattcttggactaaatt 294  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||    
T  3754606 tgggttatgaaggaatatggaaataaagagtcttggactaaatt 3754649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 4142175 - 4142124
Alignment:
Q  255 ttatgaaggattatggaattaaagattcttggactaaattattcactgttcc 306  Q
    |||||||||| ||||||| |||||| |||||||||||||| |||||| ||||    
T  4142175 ttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcc 4142124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 968677 - 968727
Alignment:
Q  251 tgggttatgaaggattatggaattaaagattcttggactaaattattcact 301  Q
    ||||||||||||||  |||||| |||||| || ||||||||||||||||||    
T  968677 tgggttatgaaggaacatggaaataaagagtcatggactaaattattcact 968727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 4157985 - 4157939
Alignment:
Q  255 ttatgaaggattatggaattaaagattcttggactaaattattcact 301  Q
    |||||||||| ||||||| |||||| |||||||||||||| ||||||    
T  4157985 ttatgaaggaatatggaaataaagagtcttggactaaattgttcact 4157939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 997582 - 997631
Alignment:
Q  251 tgggttatgaaggattatggaattaaagattcttggactaaattattcac 300  Q
    ||||| |||||||| ||||||| |||||| |||||||||||| |||||||    
T  997582 tgggtaatgaaggaatatggaaataaagagtcttggactaaactattcac 997631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 1013972 - 1014021
Alignment:
Q  251 tgggttatgaaggattatggaattaaagattcttggactaaattattcac 300  Q
    ||||| |||||||| ||||||| |||||| |||||||||||| |||||||    
T  1013972 tgggtaatgaaggaatatggaaataaagagtcttggactaaactattcac 1014021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 13498234 - 13498275
Alignment:
Q  255 ttatgaaggattatggaattaaagattcttggactaaattat 296  Q
    |||||||||| ||||||| |||||| ||||||||||||||||    
T  13498234 ttatgaaggaatatggaaataaagagtcttggactaaattat 13498275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 44001605 - 44001642
Alignment:
Q  255 ttatgaaggattatggaattaaagattcttggactaaa 292  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  44001605 ttatgaaggaatatggaattaaagagtcttggactaaa 44001642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 803263 - 803211
Alignment:
Q  251 tgggttatgaaggattatggaattaaagattcttggactaaattattcactgt 303  Q
    ||||||||||| || ||||||| |||||| ||||||||||| || ||||||||    
T  803263 tgggttatgaaagaatatggaaataaagagtcttggactaagttgttcactgt 803211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 20293005 - 20293046
Alignment:
Q  255 ttatgaaggattatggaattaaagattcttggactaaattat 296  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  20293005 ttatgaaggaatatggaattaaagagtcttggactaaattat 20293046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 20305866 - 20305907
Alignment:
Q  255 ttatgaaggattatggaattaaagattcttggactaaattat 296  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  20305866 ttatgaaggaatatggaattaaagagtcttggactaaattat 20305907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 20310270 - 20310311
Alignment:
Q  255 ttatgaaggattatggaattaaagattcttggactaaattat 296  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  20310270 ttatgaaggaatatggaattaaagagtcttggactaaattat 20310311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 11081819 - 11081862
Alignment:
Q  251 tgggttatgaaggattatggaattaaagattcttggactaaatt 294  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||    
T  11081819 tgggttatgaaggagtatggaaataaagagtcttggactaaatt 11081862  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 20301453 - 20301494
Alignment:
Q  255 ttatgaaggattatggaattaaagattcttggactaaattat 296  Q
    |||||||||| |||| ||||||||| ||||||||||||||||    
T  20301453 ttatgaaggaatatgcaattaaagagtcttggactaaattat 20301494  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 6538844 - 6538893
Alignment:
Q  255 ttatgaaggattatggaattaaagattcttggactaaattattcactgtt 304  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||| ||||    
T  6538844 ttatgaaggagtatggaaataaagattcttggactaaattgttcagtgtt 6538893  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 20538018 - 20538077
Alignment:
Q  245 gatacatgggttatgaaggattatggaattaaagattcttggactaaattattcactgtt 304  Q
    |||| |||||| ||||| || ||||||||| |||| |||||||||||||| |||||||||    
T  20538018 gatatatgggtcatgaatgaatatggaatttaagaatcttggactaaattgttcactgtt 20538077  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 89149 - 89192
Alignment:
Q  251 tgggttatgaaggattatggaattaaagattcttggactaaatt 294  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||    
T  89149 tgggttatgaaggaatatggaaataaagagtcttggactaaatt 89192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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