View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_24 (Length: 318)
Name: NF8661_low_24
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 32953157 - 32953457
Alignment:
| Q |
16 |
catttatcgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagtggttgatttcaagaccaaagatatatcgcagtgcaatagtga |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32953157 |
catttatcgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagtggtcgatttcaagaccaaagatatatcgcagtgcaatagtga |
32953256 |
T |
|
| Q |
116 |
ccatccataacggaggc-------atgttattggccgttttaacagtgggaagaaaaataacaggaacatccttacggccatggcacgatgttttggtcg |
208 |
Q |
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| T |
32953257 |
ccatccataacgcaggcggcgattatgttattggccgttttaacagtgggaagaaaaataacaggaacatccttacggccacggcacgatgttttggtcg |
32953356 |
T |
|
| Q |
209 |
cgactgaccaaccattacagctgcnnnnnnngaacacaaatttccagatcctagtcatcacctcctttttatttacagctccgttactcctttgatgtcc |
308 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32953357 |
cgactgaccaaccattacagctgcaaaaaaagaacacaaatttccagatcctagtcatcacctcctttttatttacagctccgttactcctttgatttcc |
32953456 |
T |
|
| Q |
309 |
a |
309 |
Q |
| |
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| |
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| T |
32953457 |
a |
32953457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 32885377 - 32885454
Alignment:
| Q |
16 |
catttatcgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagtggttgatttcaagaccaaag |
93 |
Q |
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| T |
32885377 |
catttattgtgatcatgggtttgtatctgttgctgtgggggaaagaaggtgacaaagaggttgatttcaagaccaaag |
32885454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 32935763 - 32935838
Alignment:
| Q |
16 |
catttatcgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagtggttgatttcaagaccaa |
91 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||| |
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| T |
32935763 |
catttattgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagagattgatttgaagaccaa |
32935838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 19503608 - 19503512
Alignment:
| Q |
19 |
ttatcgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagtggttgatttcaagaccaaagatatatcgcagtgcaatagtga |
115 |
Q |
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|||| ||||||||||| | || ||||| |||||||||||||||||||||| || |||||||||||||||||||| || || ||||||| ||||||| |
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| T |
19503608 |
ttattgtcatcatgggactatacttgttactgtgggggaaagaaggtgacagagaggttgatttcaagaccaaaggtaaattgcagtgctatagtga |
19503512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 32896099 - 32896195
Alignment:
| Q |
18 |
tttatcgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagtggttgatttcaagaccaaagatatatcgcagtgcaatagtg |
114 |
Q |
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||||| |||||||||||| | ||||||||||||||||| |||||||||||||||| |||||| |||||||||||| || | ||||| |||||||| |
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| T |
32896099 |
tttattgtcatcatgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatatcaagaccaaagttaaaaggcagtacaatagtg |
32896195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 32919531 - 32919604
Alignment:
| Q |
18 |
tttatcgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagtggttgatttcaagaccaa |
91 |
Q |
| |
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||||| |||||| ||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
32919531 |
tttattgtcatcgtgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatttcaagaccaa |
32919604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 7805902 - 7805849
Alignment:
| Q |
247 |
aatttccagatcctagtcatcacctcctttttatttacagctccgttactcctt |
300 |
Q |
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|||||||||||| | ||||||||||||| ||||||||||||| |||||||||| |
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| T |
7805902 |
aatttccagatctttgtcatcacctcctctttatttacagctttgttactcctt |
7805849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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