View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_25 (Length: 318)
Name: NF8661_low_25
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 40848775 - 40849066
Alignment:
| Q |
14 |
gagtgcacctcattcatttattgaatcattgtaaaatagaaaaatgattacaacctaagtgaaggaggaggatactccttttatataagaaaaagattaa |
113 |
Q |
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| T |
40848775 |
gagtgcacctcattcatt-attgaatcattgtaaaatagaaaaatgattacaacctaagtgaaggaggaggatactccttttatataagaaaaagattaa |
40848873 |
T |
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| Q |
114 |
cagaaaactaatcacaaactaaaaacgaacaaaaccgtaaattagttagtgagcctaaatcttattcattgcctatagtgtatctcgttgatttgtttgt |
213 |
Q |
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| T |
40848874 |
tagaaaactaatcacaaactaaaaacaaacaaaaccgtaaattagttagtgagccttaatcttattcattgcctatagtgtatctcgttgatttgtttgt |
40848973 |
T |
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| Q |
214 |
aatagtaaaatttgaagacatttgtaatgaagtttatacattcgattttccaatcac-gtttataactctacaagtgtagagaaaaccatgaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40848974 |
aatagtaaaatttgaagacatttgtaatgaagtttacacattcgattttccaatcactgtttataactctacaagtgtagagaaaaccatgaa |
40849066 |
T |
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