View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_26 (Length: 317)
Name: NF8661_low_26
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 33 - 299
Target Start/End: Complemental strand, 2821195 - 2820929
Alignment:
| Q |
33 |
gaagccagagtcgctcagtgaacgggatccactttttgctgattattgcaggatgagtggaaatattttactttgagctgtatcgtggagaaccaaattt |
132 |
Q |
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| T |
2821195 |
gaagccacagtcgctcagtgaatgggatccactttttgctgattattgcaggatgagaggaaatattttactttgagctgtatcgtggagaaccaaattg |
2821096 |
T |
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| Q |
133 |
ctgtccgcattgacacaagaaacaatcaagtcagttatctcatagaattgtcaacttaattaaacacactaaatctttttcaaaagaaaacgaaacatat |
232 |
Q |
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| T |
2821095 |
ctgtccgcattgacacaagaaacaatcaagtcagttatctcatagaattgtcaacttaattaaacacactaaatctttttcaaaagaaaatgaaacatat |
2820996 |
T |
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| Q |
233 |
aaaataaaacgtcgatataaaactgaatgctttataagagaagcattgcatgatcagaggaaaggta |
299 |
Q |
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| T |
2820995 |
aaaataaaacgttgatataaaactgaatgctttataagagaagcattgcatgatcagaggaaaggta |
2820929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 120 - 299
Target Start/End: Complemental strand, 2809828 - 2809640
Alignment:
| Q |
120 |
gagaaccaaatttctgtccgcattgacacaagaaacaatcaagtcagttatctcatagaattgtcaacttaattaaacacactaaatctttttcaaaaga |
219 |
Q |
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| T |
2809828 |
gagaaccaaatttctgtccgcattgacacaaaaaacaatcaagtcagttatctcata-----ctcagcttaattaaacacattaaatctttttcaaaaca |
2809734 |
T |
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| Q |
220 |
aaacgaaacatataaaataaaacgtcgatataaaact--------------gaatgctttataagagaagcattgcatgatcagaggaaaggta |
299 |
Q |
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| T |
2809733 |
aaatgaaacacattaaatgaaacgtcgttataaaactgaatgctagtacaagaatgctttataagagaagcattgcatgatcagaggaaaggta |
2809640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 2761705 - 2761632
Alignment:
| Q |
103 |
ctttgagctgtatcgtggagaaccaaatttctgtccgcattgacacaagaaacaatcaagtcagttatctcata |
176 |
Q |
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| T |
2761705 |
ctttgagctgtattatggagaaccaaatttctggccacaccgacacaagaaaaaatcaagtcagttatctcata |
2761632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 2793475 - 2793422
Alignment:
| Q |
143 |
tgacacaagaaacaatcaagtcagttatctcatagaattgtcaacttaattaaa |
196 |
Q |
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| T |
2793475 |
tgacacgagaaacaatttagtcagttatctcatacaattgtcaacttaattaaa |
2793422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 266 - 299
Target Start/End: Complemental strand, 2799766 - 2799733
Alignment:
| Q |
266 |
ataagagaagcattgcatgatcagaggaaaggta |
299 |
Q |
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| T |
2799766 |
ataagagaagcattgcatgatcagaggaaaggta |
2799733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 2773530 - 2773460
Alignment:
| Q |
125 |
ccaaatttctgtccgcattgacacaagaaacaatcaagtcagttatctcatagaattgtcaacttaattaa |
195 |
Q |
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| T |
2773530 |
ccaaattgctgtccacattggcacaagaaacaatcgactcaggtatctcatacatttgccaatttaattaa |
2773460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 2771605 - 2771531
Alignment:
| Q |
147 |
acaagaaacaatcaagtcagttatctcatagaattgtc----aacttaattaaacacactaaatctttttcaaaa |
217 |
Q |
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| T |
2771605 |
acaagaaacaatttactcagttatctcatacaattgtcggtcaacttaattaaacacgtcaaatctttttcaaaa |
2771531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 103 - 198
Target Start/End: Original strand, 11114997 - 11115092
Alignment:
| Q |
103 |
ctttgagctgtatcgtggagaaccaaatttctgtccgcattgacacaagaaacaatcaagtcagttatctcatagaattgtcaacttaattaaaca |
198 |
Q |
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| T |
11114997 |
ctttgagcggtatcattgagaacccaaattctgtccaaatttatacaagaaacaattgagtcagttatctcatacaattgtcaactaaattaaaca |
11115092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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