View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_28 (Length: 305)
Name: NF8661_low_28
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 38069533 - 38069236
Alignment:
| Q |
1 |
gctccagatgtccagtcttgggcgtgagagggatgtgtttagtgtcccacattgaatgtgaaatggtctttgataggctttgataccattttagaatttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38069533 |
gctccagatgtccagtcttgggcgtgagagggatgtgtttagtgtcccacattgaatgtgaaatggtctttgataggctttgataccattttagaatttg |
38069434 |
T |
|
| Q |
101 |
ggttgaacttgccacatttcttacggaaccggcttgtaaggtgaggattataaacacatttttagaccatatctcatgcaatgtgagactcctaacaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38069433 |
ggttgaacttgccacatttcttacggaaccggcttgtaaggtgaggattataaacacatttttagaccatatctcatgcaatgcgagactcctaacaaaa |
38069334 |
T |
|
| Q |
201 |
ctaatactttgacttcaaatttttgttctacacttgtacctttgcttgctcttacttcaattgtggtatctttcctcatataatcgtatatgtctgtg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38069333 |
ctaatactttgacttcaaatttttgttctacacttgtacctttgcttgctcttacttcaattgtggtatctttcctcatataatcgtatatgtctgtg |
38069236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 10485448 - 10485406
Alignment:
| Q |
148 |
ttataaacacatttttagaccatatctcatgcaatgtgagact |
190 |
Q |
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| T |
10485448 |
ttataaacacattttcagactatatctcatccaatgtgagact |
10485406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 19385767 - 19385726
Alignment:
| Q |
149 |
tataaacacatttttagaccatatctcatgcaatgtgagact |
190 |
Q |
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||||||| ||||||||| ||||||||||| |||||||||||| |
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| T |
19385767 |
tataaactcatttttaggccatatctcatccaatgtgagact |
19385726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 19385647 - 19385611
Alignment:
| Q |
67 |
tctttgataggctttgataccattttagaatttgggt |
103 |
Q |
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|||| |||||||||||||||||| ||||||||||||| |
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| T |
19385647 |
tcttggataggctttgataccatcttagaatttgggt |
19385611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 37824223 - 37824194
Alignment:
| Q |
148 |
ttataaacacatttttagaccatatctcat |
177 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
37824223 |
ttataaacacatttttagaccatatctcat |
37824194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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