View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_29 (Length: 298)
Name: NF8661_low_29
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 6967906 - 6967611
Alignment:
| Q |
1 |
tttctcacatattcaccttggagtttctttgcttggttggttgatttagatgttaagtagttttcaatgtataagaaagcttcattggttctcatataat |
100 |
Q |
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| T |
6967906 |
tttctcacatattcaccttggagtttctttgcttggttggttgatttagatgttaagtagttttcaatgtataagaaagcttcattggttctcatataat |
6967807 |
T |
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| Q |
101 |
caccaatgttctcaaagaatctaacctcaacaaaagggtaacaaaagttggctaatttctctgagaatttctcaatgagtgcatgaacttgatgaggaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6967806 |
caccaatgttctcaaagaatctaacctcaacaaaagggtaacaaaagttggctaatttctctgagaatttctcaatgagtgcatgaacttgatgaggaca |
6967707 |
T |
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| Q |
201 |
ataactttgaatcatagcccaaataaacattaggcttgcaacctttgaacctatcagaccccaaatttcaaacatgtttttgttttctctgctact |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
6967706 |
ataactttgaatcatagcccaaataaacattaggcttgcaacctttgaacctatcagaccccaaatttcaaacatgttttttttttctcttctact |
6967611 |
T |
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