View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_3 (Length: 603)
Name: NF8661_low_3
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 18 - 558
Target Start/End: Complemental strand, 580442 - 579902
Alignment:
| Q |
18 |
acatcaacggaattaaaagaatttcgaagcaatttcaattcttcatcgtacataggaacattaataaaggaaatggaatcagtaagcaactccaattctt |
117 |
Q |
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| T |
580442 |
acatcaacggaattaaaagaatttcgaagcaatttcaattcttcatcgtacataggaacattaataaaggaaatggaatcagtaagcaactccaattctt |
580343 |
T |
|
| Q |
118 |
ctaacaacaaaaagttattgaaaagagaatgagaagcgagaacggagaatgggatttgnnnnnnngaatggatttgaagaattttaactctccgcttaaa |
217 |
Q |
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| T |
580342 |
ctaacaacaaaaagttattgaaaagagaatgagaagcgagaacggagaatgggatttgaaaaaaagaatggatttgaagaattttaactctccgcttaaa |
580243 |
T |
|
| Q |
218 |
gatgtttgataaccatgaatctagaaaagaccaattatacaaagtacagagaaaaagagaaacgtgatccatggctaaactatcgttaagaagaagcgct |
317 |
Q |
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| T |
580242 |
gatgtttgataaccatgaatctagaagagaccaattatacaaagtaaagaggaaaagagaaacgtgatccatggctaaactatcgttaagaagaagcgct |
580143 |
T |
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| Q |
318 |
ctgtcaacaaaggtggcaaaattctgcattcttttaagcctgatagtgaaatcaaaagaaagttgataatcatgtaaggagagtttggtgatggaagtcc |
417 |
Q |
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| T |
580142 |
ctgtcaacaaaggtggaaaaattctgcattcttttaagcctgatagtgaaatcaaaagaaagttgataatcatgtaaggagagtttggtgatggaagtcc |
580043 |
T |
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| Q |
418 |
aacgacgttcccattttttggataagatggaggtgcgaatagcatctttggttggtacgaaactgagaatgtgagttatcactggttcaggaagcatgtt |
517 |
Q |
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| T |
580042 |
aacgacgttcccattttttggataagatggaggtgcgaatagcatctttggttggtacgaaactgagaatgtgagttatcactggttcaggaagcatgtt |
579943 |
T |
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| Q |
518 |
ggagattgtgtcttcaactgcatttgcatttgcgattttgg |
558 |
Q |
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| T |
579942 |
ggagattgtgtcttcaactgcatttgcatttgcgattttgg |
579902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 390 - 508
Target Start/End: Complemental strand, 1200261 - 1200143
Alignment:
| Q |
390 |
tgtaaggagagtttggtgatggaagtccaacgacgttcccattttttggataagatggaggtgcgaatagcatctttggttggtacgaaactgagaatgt |
489 |
Q |
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| T |
1200261 |
tgtaaggagagtttggtgaggaaagtccaacggtgttcccatgttttggataagacagaagtgcgaactgcgtctttggttggaaggaaagagagaatgt |
1200162 |
T |
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| Q |
490 |
gagttatcactggttcagg |
508 |
Q |
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| T |
1200161 |
gagttatcactggttcagg |
1200143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 1213916 - 1213863
Alignment:
| Q |
101 |
aagcaactccaattcttctaacaacaaaaagttattgaaaagagaatgagaagc |
154 |
Q |
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| T |
1213916 |
aagcaattccaattcttctaatagcaaaaagtttttgaaaagagaatcagaagc |
1213863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 496
Target Start/End: Complemental strand, 1213590 - 1213484
Alignment:
| Q |
390 |
tgtaaggagagtttggtgatggaagtccaacgacgttcccattttttggataagatggaggtgcgaatagcatctttggttggtacgaaactgagaatgt |
489 |
Q |
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||||| ||||||||||||| |||||||| || ||||||| | || |||||||| || ||||||| ||| ||||||||||| | ||| |||||||| |
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| T |
1213590 |
tgtaaagagagtttggtgagtgaagtccagcggtgttcccaactcttagataagatagaagtgcgaacagcgtctttggttgggagaaaagagagaatgt |
1213491 |
T |
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| Q |
490 |
gagttat |
496 |
Q |
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| T |
1213490 |
gagttat |
1213484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 243
Target Start/End: Original strand, 8193030 - 8193171
Alignment:
| Q |
102 |
agcaactccaattcttctaacaacaaaaagttattgaaaagagaatgagaagcgagaacggagaatgggatttgnnnnnnngaatggatttgaagaattt |
201 |
Q |
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| T |
8193030 |
agcaattccaattcttctaataatatgaaatttttaaatagagaatcagaagcaagaacggagaatgagagttgaaactgcgaatggattcgaagatttt |
8193129 |
T |
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| Q |
202 |
taactctccgcttaaagatgtttgataaccatgaatctagaa |
243 |
Q |
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| T |
8193130 |
taactctgcggttgaagatgttagagaaccatatatctagaa |
8193171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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