View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8661_low_30 (Length: 291)

Name: NF8661_low_30
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8661_low_30
NF8661_low_30
[»] chr4 (8 HSPs)
chr4 (1-250)||(9593409-9593659)
chr4 (150-271)||(9606069-9606190)
chr4 (38-256)||(9602199-9602424)
chr4 (1-269)||(9581610-9581866)
chr4 (1-269)||(9587305-9587561)
chr4 (73-239)||(9569616-9569780)
chr4 (4-88)||(9569389-9569473)
chr4 (29-96)||(54291085-54291150)
[»] chr7 (1 HSPs)
chr7 (38-160)||(42446568-42446690)
[»] chr6 (3 HSPs)
chr6 (29-136)||(32740480-32740587)
chr6 (29-143)||(29131530-29131643)
chr6 (38-162)||(29145527-29145651)
[»] scaffold0054 (2 HSPs)
scaffold0054 (39-102)||(39601-39664)
scaffold0054 (39-102)||(33250-33313)
[»] chr5 (1 HSPs)
chr5 (41-74)||(43323021-43323054)


Alignment Details
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 9593659 - 9593409
Alignment:
Q  1 tgcttacaaagaagtgaactgtattgaccggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttca 100  Q
    ||||| |||| ||||||| | |||||| |||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  9593659 tgcttgcaaaaaagtgaattctattgatcggatattaatatacaaggaaaacattcttccaattggaggaataagtaattagttattttccttgttttca 9593560  T
Q  101 cctggagcaaaatgattgtggccattgggatattacattgtatgcgaagtgtcttgtcaattagaa-tctcggagattgattgaatctgtagcgggccat 199  Q
    || ||||||||||||| ||||  ||||| ||||||| |||||||| |||||||||||||||| ||| || | ||||||| ||||||| |||||||| |||    
T  9593559 ccaggagcaaaatgatcgtggtgattggaatattaccttgtatgcaaagtgtcttgtcaattggaattccctgagattgcttgaatcggtagcgggtcat 9593460  T
Q  200 tatccttgtatcgttgctgatgcttatgtccttctgtttttggctcatctg 250  Q
    ||||||||||| |||||| ||||||||||  || ||||||| |||||||||    
T  9593459 tatccttgtattgttgctcatgcttatgtggttttgttttttgctcatctg 9593409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 9606190 - 9606069
Alignment:
Q  150 tgtcttgtcaattagaatctcggagattgattgaatctgtagcgggccattatccttgtatcgttgctgatgcttatgtccttctgtttttggctcatct 249  Q
    ||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9606190 tgtcttgtcaattagaatctcggagattgcttgaatcggtagcgagccattatccttgtatcgttgctgatgcttatgtccttctgtttttggctcatct 9606091  T
Q  250 gttgctgcttttctggtctgtg 271  Q
    ||||||||||||||||||||||    
T  9606090 gttgctgcttttctggtctgtg 9606069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 38 - 256
Target Start/End: Complemental strand, 9602424 - 9602199
Alignment:
Q  38 atatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatg-------attgtggccattggga 130  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||       ||||  |  |||||||    
T  9602424 atatacaaggaaaacattcttccaatcggaggaataagtaattagttatttttcttgttttcaccaggagcaaaatgcaaaatgattgcagtgattggga 9602325  T
Q  131 tattacattgtatgcgaagtgtcttgtcaattagaatctcggagattgattgaatctgtagcgggccattatccttgtatcgttgctgatgcttatgtcc 230  Q
    |||||| |||||||| |||||||||||||||| ||| | ||||||||  || |||| |||||||||||||||||||||||||| |||||||| ||| |      
T  9602324 tattaccttgtatgcaaagtgtcttgtcaattggaaccccggagatttcttaaatcggtagcgggccattatccttgtatcgtcgctgatgcatatatgg 9602225  T
Q  231 ttctgtttttggctcatctgttgctg 256  Q
    || ||||||||||||||||| |||||    
T  9602224 ttttgtttttggctcatctggtgctg 9602199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 9581866 - 9581610
Alignment:
Q  1 tgcttacaaagaagtgaactgtattgaccggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttca 100  Q
    |||||||||||||||||| | |||||| |||||||| || |||||||||| |||||||||||||||||||||||||| ||||||||||||         |    
T  9581866 tgcttacaaagaagtgaattctattgatcggatagtaatgtacaaggaaa-cattcttccaattggaggaataagtaattagttattttt---------a 9581777  T
Q  101 cctggagcaaaatgattgtggccattgggatattacattgtatgcgaagtgtcttgtcaattagaatctcggagattgattgaatctgtagcgggccatt 200  Q
    || |||| |||||||||||||  ||||||||||||| || ||| | |||||||||||||||| ||||  | ||||| | ||||||| ||||| |||||||    
T  9581776 ccaggagtaaaatgattgtggtgattgggatattaccttatatacaaagtgtcttgtcaatttgaattccagagatcgcttgaatcggtagcaggccatt 9581677  T
Q  201 atccttgtatcgttgctgatgcttatgtccttctgtttttggctcatctgttgctgcttttctggtctg 269  Q
     |||||||||||| ||||||| || |||  ||||| |||||||||||||| ||||| ||||||||||||    
T  9581676 gtccttgtatcgtcgctgatgattctgtggttctg-ttttggctcatctggtgctg-ttttctggtctg 9581610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 9587561 - 9587305
Alignment:
Q  1 tgcttacaaagaagtgaactgtattgaccggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttca 100  Q
    |||||||||||||||||| | |||||| |||||||| || |||||||||| |||||||||||||||||||||||||| ||||||||||||         |    
T  9587561 tgcttacaaagaagtgaattctattgatcggatagtaatgtacaaggaaa-cattcttccaattggaggaataagtaattagttattttt---------a 9587472  T
Q  101 cctggagcaaaatgattgtggccattgggatattacattgtatgcgaagtgtcttgtcaattagaatctcggagattgattgaatctgtagcgggccatt 200  Q
    || |||| |||||||||||||  ||||||||||||| || ||| | |||||||||||||||| ||||  | ||||| | ||||||| ||||| |||||||    
T  9587471 ccaggagtaaaatgattgtggtgattgggatattaccttatatacaaagtgtcttgtcaatttgaattccagagatcgcttgaatcggtagcaggccatt 9587372  T
Q  201 atccttgtatcgttgctgatgcttatgtccttctgtttttggctcatctgttgctgcttttctggtctg 269  Q
     |||||||||||| ||||||| || |||  ||||| |||||||||||||| ||||| ||||||||||||    
T  9587371 gtccttgtatcgtcgctgatgattctgtggttctg-ttttggctcatctggtgctg-ttttctggtctg 9587305  T

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Target: chr4; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 73 - 239
Target Start/End: Original strand, 9569616 - 9569780
Alignment:
Q  73 aagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattacattgtatgcgaagtgtcttgtcaattagaatctcgg 172  Q
    ||||| |||||||||||||||||||||||  ||||||||||||||||||  ||||||||||||| |||||||| ||||||||||||  |  |||||  ||    
T  9569616 aagtaattagttatttttcttgttttcacgaggagcaaaatgattgtggtgattgggatattaccttgtatgcaaagtgtcttgtc--taggaatcctgg 9569713  T
Q  173 agattgattgaatctgtagcgggccattatccttgtatcgttgctgatgcttatgtccttctgtttt 239  Q
    |||||| || |||| |||||||||||||||||||||||||| ||||||||||||||  |||||||||    
T  9569714 agattgctttaatcggtagcgggccattatccttgtatcgtcgctgatgcttatgtggttctgtttt 9569780  T

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Target: chr4; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 9569389 - 9569473
Alignment:
Q  4 ttacaaagaagtgaactgtattgaccggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttattt 88  Q
    ||||||||||||||| | ||||||  ||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  9569389 ttacaaagaagtgaattctattgataggatagtaatatacaaggaaaatattcttccaattggaggaataagtaattagttattt 9569473  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 54291085 - 54291150
Alignment:
Q  29 cggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgtt 96  Q
    |||||| | ||||||||||||||||||||||| |||||| ||||  ||| ||| || |||||||||||    
T  54291085 cggataataatatacaaggaaaacattcttcccattggaagaat--gtaattaattgtttttcttgtt 54291150  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 160
Target Start/End: Original strand, 42446568 - 42446690
Alignment:
Q  38 atatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattaca 137  Q
    ||||||||||||||||||||||||||||||||||||| || ||| || |||||||||||||||||  |||  | ||||||||||   ||| ||||||||     
T  42446568 atatacaaggaaaacattcttccaattggaggaataattaattaattgtttttcttgttttcaccaagaggtatatgattgtggttcttgagatattacc 42446667  T
Q  138 ttgtatgcgaagtgtcttgtcaa 160  Q
    |||||| | ||||  ||||||||    
T  42446668 ttgtatacaaagtcccttgtcaa 42446690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 32740587 - 32740480
Alignment:
Q  29 cggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgg 128  Q
    |||||| | |||||| |||| || ||||||| ||||||||||| ||||| |||||| ||||||||||||||||  |||| |||||||||  || ||||||    
T  32740587 cggataataatatacgaggataatattcttcaaattggaggaacaagtaattagttttttttcttgttttcactgggaggaaaatgatttcggtcattgg 32740488  T
Q  129 gatattac 136  Q
    ||||||||    
T  32740487 gatattac 32740480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 29131530 - 29131643
Alignment:
Q  29 cggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgg 128  Q
    |||||| | ||||||||||| |||||||||||||||||||||| |||||  ||||| || ||| |||||||||  |||| |||||||||| || ||||||    
T  29131530 cggataataatatacaaggataacattcttccaattggaggaacaagtaagtagtt-ttcttcctgttttcactgggaggaaaatgattgcggtcattgg 29131628  T
Q  129 gatattacattgtat 143  Q
    | |||||| ||||||    
T  29131629 gctattaccttgtat 29131643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 162
Target Start/End: Original strand, 29145527 - 29145651
Alignment:
Q  38 atatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattaca 137  Q
    |||||||||||| ||||||||||||||||||||  |||||  || || ||||||||||| |||||  |||  | ||||||||||   ||| |||||||||    
T  29145527 atatacaaggaatacattcttccaattggaggagcaagtagctaattgtttttcttgttatcaccaagaggtatatgattgtggttgttgagatattaca 29145626  T
Q  138 ttgtatgcgaagtgtcttgtcaatt 162  Q
    || ||||| || ||  |||||||||    
T  29145627 ttttatgcaaactggtttgtcaatt 29145651  T

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Target: scaffold0054 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 39664 - 39601
Alignment:
Q  39 tatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacc 102  Q
    ||||||||||||||||||||  ||||| ||||||||||| ||| ||||||||||||||||||||    
T  39664 tatacaaggaaaacattcttgtaattgaaggaataagtaattaattatttttcttgttttcacc 39601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 33313 - 33250
Alignment:
Q  39 tatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacc 102  Q
    |||||||||||||||||||| | |||| ||||||||||| ||| ||||||||| ||||||||||    
T  33313 tatacaaggaaaacattcttgccattgaaggaataagtaattaattatttttcatgttttcacc 33250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 43323021 - 43323054
Alignment:
Q  41 tacaaggaaaacattcttccaattggaggaataa 74  Q
    |||||||||||||| |||||||||||||||||||    
T  43323021 tacaaggaaaacatgcttccaattggaggaataa 43323054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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