View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_34 (Length: 270)
Name: NF8661_low_34
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 38740995 - 38741229
Alignment:
| Q |
18 |
aacatatacggtgtatttgattctttgtagtatagtgaaatataatcctttacattcttgcttttgtttccactttggtacataactaacttcctgtgag |
117 |
Q |
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| T |
38740995 |
aacatatatggtgtatttgattctttgtagtatagtgaaatataatcctttacattcttgcttttgtttccactttggtacataactaacttcctgtgag |
38741094 |
T |
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| Q |
118 |
gtttaaacacatttttaacatattcattcactatgaattagagaccaaaattataattcatgaaattattttttatcaggaacatatatattaatgtata |
217 |
Q |
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| T |
38741095 |
gtttaaacacatttttaacatattcattcactatgaattagagaccaaaattataattcatgaaattattttttatcaggaacatata---ttatgtata |
38741191 |
T |
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| Q |
218 |
ccatttgtagcctccagcttcaaattttcccgattcat |
255 |
Q |
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| T |
38741192 |
ccatttgtagcctccagcttcaaattttcccgattcat |
38741229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 46 - 255
Target Start/End: Complemental strand, 51006633 - 51006427
Alignment:
| Q |
46 |
agtatagtgaaatataatcctttacattcttgcttttgtttccactttggtacataactaacttcctgtgaggtttaaacacatttttaacatattcatt |
145 |
Q |
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| T |
51006633 |
agtatagtgaaatatgatcctttacattcttgcttttgtttccacttgggtacaaaactaacttcctgtgaggtataaatacatttttaacatattcatt |
51006534 |
T |
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| Q |
146 |
cactatgaattagagaccaaaattataattcatgaaattattttttatcaggaacatatata----ttaatgtataccatttgtagcctccagcttcaaa |
241 |
Q |
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| T |
51006533 |
c----tgaa--atggaccaaaattatcattcatgaaatta-tttttatcaaaaacatatataatgtatattgtataccatttgtggcctccagcttcaaa |
51006441 |
T |
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| Q |
242 |
ttttcccgattcat |
255 |
Q |
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| T |
51006440 |
cctccccgattcat |
51006427 |
T |
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