View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_35 (Length: 269)
Name: NF8661_low_35
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_35 |
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| [»] scaffold0148 (1 HSPs) |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 27003 - 27241
Alignment:
| Q |
13 |
gttatagtttgcattgcaaagacacctctttcctttactacaggtagaatgtttccagccatggcaatcaacagagttattacagatgggttcggatggt |
112 |
Q |
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| T |
27003 |
gttatagtttgcattgcaaagacacctctttcctttactacaagtagaatggttccagccatggcaatcaacagagttattacagatgggttcggaaggt |
27102 |
T |
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| Q |
113 |
ggttcccaactaactacaagttgttcagagcacgtatcgtcactgatcatgtgaaacggtaaagaaacgttcagacttcctgtccgtttagatccttcat |
212 |
Q |
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| T |
27103 |
ggttcccaactaacttcaagttgttcagagcacgtattgtcactggtcatgcgaaacggtaaagaaacgttcagacttcctgtccgtttagatccttcat |
27202 |
T |
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| Q |
213 |
cacaactagtaaaggaataatcctgattttgaagggtaa |
251 |
Q |
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| T |
27203 |
cacaactagtaaaggaataatcctcattatgaagggtaa |
27241 |
T |
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Target: scaffold0280 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 1850 - 1980
Alignment:
| Q |
14 |
ttatagtttgcattgcaaagacacctctttcctttactacaggtagaatgtttccagccatggcaatcaacagagttattacagatgggttcggatggtg |
113 |
Q |
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||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| |||| | |||||||| |||||| ||| | | ||||||| |||| |
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| T |
1850 |
ttatactttgcattgcaaagacacttgtttcctttactacaggtagaatgtttccaaccatagaaatcaacaaagttatcacaaacgagttcggaaggtg |
1949 |
T |
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| Q |
114 |
gttcccaactaactacaagttgttcagagca |
144 |
Q |
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| T |
1950 |
gatcccaactaacttccacttgttcagagca |
1980 |
T |
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