View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8661_low_36 (Length: 266)

Name: NF8661_low_36
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8661_low_36
NF8661_low_36
[»] chr1 (8 HSPs)
chr1 (14-266)||(31644089-31644341)
chr1 (62-264)||(36989231-36989433)
chr1 (83-257)||(12774849-12775023)
chr1 (83-258)||(12804550-12804725)
chr1 (83-266)||(50788850-50789033)
chr1 (111-266)||(42287057-42287212)
chr1 (49-264)||(28496139-28496354)
chr1 (77-150)||(4160283-4160356)
[»] chr7 (2 HSPs)
chr7 (140-266)||(40749359-40749485)
chr7 (134-264)||(44150833-44150963)
[»] chr4 (2 HSPs)
chr4 (113-237)||(22085566-22085690)
chr4 (159-264)||(30518181-30518286)
[»] chr8 (2 HSPs)
chr8 (76-266)||(33186640-33186830)
chr8 (161-266)||(5788754-5788859)
[»] chr2 (3 HSPs)
chr2 (96-264)||(38895890-38896058)
chr2 (161-264)||(42898288-42898391)
chr2 (119-237)||(40040737-40040855)


Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 31644341 - 31644089
Alignment:
Q  14 ggacatcacctaccatggaagttgaagcaaaggaacaacaaagatgttattaaaaagagagcttatgtttgtccagagccttcatgtgttcatcataacc 113  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31644341 ggacataacctaccatggaagttgaagcaaaggaacaacaaagatgttattaaaaagagagcttatgtttgtccagagccttcatgtgttcatcataacc 31644242  T
Q  114 cttcaagagctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgc 213  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31644241 cttcaagggctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgc 31644142  T
Q  214 tgttcattctgattggaaagctcactctaaaacctgtggtactagagaatata 266  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31644141 tgttcattctgattggaaagctcactctaaaacctgtggtactcgagaatata 31644089  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 62 - 264
Target Start/End: Original strand, 36989231 - 36989433
Alignment:
Q  62 attaaaaagagagcttatgtttgtccagagccttcatgtgttcatcataacccttcaagagctcttggagatcttacaggaattaagaaacattatagta 161  Q
    |||| |||||| | |||||||||||| || ||||||||||| || ||||||||| ||||||| ||||| |||||||| |||||||| || || | | |||    
T  36989231 attagaaagagggtttatgtttgtcctgaaccttcatgtgtacaccataaccctgcaagagcacttggtgatcttactggaattaaaaagcacttttgta 36989330  T
Q  162 gaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactagaga 261  Q
    |||| |||||||||||||| ||||||||||||||||| || ||||  ||||||||||| ||||||||||||||||| || ||||  |||||||| || ||    
T  36989331 gaaagcatggtgagaaaaagtggaaatgtgataagtgttctaagaaatatgctgttcaatctgattggaaagctcattccaaaatatgtggtacaaggga 36989430  T
Q  262 ata 264  Q
    |||    
T  36989431 ata 36989433  T

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Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 83 - 257
Target Start/End: Original strand, 12774849 - 12775023
Alignment:
Q  83 tgtccagagccttcatgtgttcatcataacccttcaagagctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaat 182  Q
    |||||||| ||  |||||||||| ||| |||||||||| |||||||| || || || |||||||||||||| |||  |||||| ||||||||||||||||    
T  12774849 tgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggtgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaat 12774948  T
Q  183 ggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtacta 257  Q
    |||| ||||| ||||| || ||||  ||||||||||| ||||||||||||||||| |||||||| ||||||||||    
T  12774949 ggaagtgtgaaaagtgttctaagaagtatgctgttcaatctgattggaaagctcattctaaaacttgtggtacta 12775023  T

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Target: chr1; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 83 - 258
Target Start/End: Complemental strand, 12804725 - 12804550
Alignment:
Q  83 tgtccagagccttcatgtgttcatcataacccttcaagagctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaat 182  Q
    |||||||| ||  |||||||||| ||| |||||||||| |||||||| || || || ||||||||||| || | |  |||||| |||||||||||||| |    
T  12804725 tgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggtgacctcactggaattaagaagcacttttctagaaagcatggtgagaaaaagt 12804626  T
Q  183 ggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactag 258  Q
    |||||||||| ||||| || ||||  ||||||||||| ||||||||||||||||| ||||| || |||||||||||    
T  12804625 ggaaatgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactag 12804550  T

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Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 266
Target Start/End: Complemental strand, 50789033 - 50788850
Alignment:
Q  83 tgtccagagccttcatgtgttcatcataacccttcaagagctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaat 182  Q
    ||||| |||||  |||| ||||||||| |||||||||| || ||||| || || || || ||||||||||| ||   | | |||||||||||||| ||||    
T  50789033 tgtcctgagcccacatgcgttcatcatgacccttcaagggcacttggtgacctcactgggattaagaaacactactctcgcaaacatggtgagaagaaat 50788934  T
Q  183 ggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactagagaatata 266  Q
    |||| |||||||||||||| ||||  ||||||||||| ||||||||||| || || ||||| || ||||| || ||||||||||    
T  50788933 ggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatata 50788850  T

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Target: chr1; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 111 - 266
Target Start/End: Original strand, 42287057 - 42287212
Alignment:
Q  111 acccttcaagagctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatcta 210  Q
    |||||||||||||| | |||||||| || |||||||| || ||||    | | || || |||||||| || ||||||||||| || ||||||||||  ||    
T  42287057 acccttcaagagctttaggagatctaactggaattaaaaagcatttctctcgtaagcacggtgagaagaagtggaaatgtgaaaaatgctcaaagaaata 42287156  T
Q  211 tgctgttcattctgattggaaagctcactctaaaacctgtggtactagagaatata 266  Q
    ||||||||| ||||| |||||||| || ||||| || |||||||||||||||||||    
T  42287157 tgctgttcaatctgactggaaagcacattctaagacttgtggtactagagaatata 42287212  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 264
Target Start/End: Complemental strand, 28496354 - 28496139
Alignment:
Q  49 caacaaagatgttattaaaaagagagcttatgtttgtccagagccttcatgtgttcatcataacccttcaagagctcttggagatcttacaggaattaag 148  Q
    ||||||||||||||| || |||| || |||  | |||||||||    | ||||| || ||| ||||||||||||| ||||| || || ||||| || ||     
T  28496354 caacaaagatgttatcaagaagaaagtttacatctgtccagagaagacctgtgtccaccatgacccttcaagagcacttggtgacctcacaggtataaaa 28496255  T
Q  149 aaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacct 248  Q
    || || | ||||||||| || |||||||| || ||||||||||| || || || || |  ||||| || || |||||||||||||||||  | ||||| |    
T  28496254 aagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacat 28496155  T
Q  249 gtggtactagagaata 264  Q
    ||||||| ||||||||    
T  28496154 gtggtacaagagaata 28496139  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 4160283 - 4160356
Alignment:
Q  77 tatgtttgtccagagccttcatgtgttcatcataacccttcaagagctcttggagatcttacaggaattaagaa 150  Q
    |||||||||||||||||  |||||||||| ||| |||||||||| || ||||| || || || ||||| |||||    
T  4160283 tatgtttgtccagagccaacatgtgttcaccatgacccttcaagggcacttggtgacctaactggaatcaagaa 4160356  T

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Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 140 - 266
Target Start/End: Original strand, 40749359 - 40749485
Alignment:
Q  140 ggaattaagaaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcact 239  Q
    ||||| |||||||||| ||||||||||||||| ||||| |||||||| ||||||||||| || ||||  ||||| || || ||||||||||||||||||     
T  40749359 ggaataaagaaacattttagtagaaaacatggcgagaagaaatggaagtgtgataagtgttccaagaaatatgcagtccaatctgattggaaagctcaca 40749458  T
Q  240 ctaaaacctgtggtactagagaatata 266  Q
    ||||||| |||||||||||||||||||    
T  40749459 ctaaaacttgtggtactagagaatata 40749485  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 264
Target Start/End: Complemental strand, 44150963 - 44150833
Alignment:
Q  134 cttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaag 233  Q
    ||||| ||||| || ||||||| |||  | |||||||||||||| |||||||||||||| |||||||| || |  ||||||||||| || |||||||| |    
T  44150963 cttactggaatcaaaaaacattttagccgcaaacatggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaagg 44150864  T
Q  234 ctcactctaaaacctgtggtactagagaata 264  Q
    |||||   ||||| ||||||||||| |||||    
T  44150863 ctcaccagaaaacttgtggtactagggaata 44150833  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 113 - 237
Target Start/End: Complemental strand, 22085690 - 22085566
Alignment:
Q  113 ccttcaagagctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatg 212  Q
    ||||| |||||| | |||||| | |||||||| |||||||||||||||||||||||||||||||| || ||||| ||||| ||||| || ||||  ||||    
T  22085690 ccttctagagctttgggagatttgacaggaataaagaaacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatg 22085591  T
Q  213 ctgttcattctgattggaaagctca 237  Q
    | ||||| |||||||||||||||||    
T  22085590 cagttcaatctgattggaaagctca 22085566  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 264
Target Start/End: Complemental strand, 30518286 - 30518181
Alignment:
Q  159 gtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactag 258  Q
    ||||||| |||||||| || || ||||| ||||| |||||||||||    ||||||||||| || ||||||||||||||||| ||||| |||||||||||    
T  30518286 gtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactag 30518187  T
Q  259 agaata 264  Q
    ||||||    
T  30518186 agaata 30518181  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 266
Target Start/End: Original strand, 33186640 - 33186830
Alignment:
Q  76 ttatgtttgtccagagccttcatgtgttcatcataacccttcaagagctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgag 175  Q
    |||||||||||| || ||| | |||||||||||| | ||||| |||||| | || ||| | || || || || || || | | |||||||||||||||||    
T  33186640 ttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaactgggataaaaaagcacttttgtagaaaacatggtgag 33186739  T
Q  176 aaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactagagaatata 266  Q
    ||||| ||||||||||| || || || ||||  ||||||||||| ||||||||||||||||||||||||   |||||| ||||||| ||||    
T  33186740 aaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcactctaaagtttgtggttctagagagtata 33186830  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 266
Target Start/End: Complemental strand, 5788859 - 5788754
Alignment:
Q  161 agaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactagag 260  Q
    ||||| ||||||||||| || ||||||||||| ||||| |||||||  ||||||||||| ||||||||||||||||| || ||||| ||||| |||||||    
T  5788859 agaaagcatggtgagaagaagtggaaatgtgaaaagtgttcaaagaaatatgctgttcaatctgattggaaagctcattccaaaacttgtggcactagag 5788760  T
Q  261 aatata 266  Q
    ||||||    
T  5788759 aatata 5788754  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 264
Target Start/End: Complemental strand, 38896058 - 38895890
Alignment:
Q  96 catgtgttcatcataacccttcaagagctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataa 195  Q
    ||||||||||| || | |||||||| ||| | |||||| | || || || ||||| || | | |||| ||||| |||||||| || ||||| ||||| ||    
T  38896058 catgtgttcataatcatccttcaagggctttgggagatttaactgggataaagaagcacttttgtaggaaacacggtgagaagaagtggaagtgtgagaa 38895959  T
Q  196 gtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactagagaata 264  Q
    |||||||||  | ||||||||||| || ||||||||||| ||||| || || |||||||||||||||||    
T  38895958 gtgctcaaaattttatgctgttcaatcggattggaaagcacactcaaagacttgtggtactagagaata 38895890  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 42898288 - 42898391
Alignment:
Q  161 agaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactagag 260  Q
    ||||| || |||||||| || ||||||||||| |||||||| ||||  ||||| ||||| || || |||||||||||||| ||||||||||| || ||||    
T  42898288 agaaagcacggtgagaagaagtggaaatgtgacaagtgctctaagaagtatgcagttcaatcagactggaaagctcactccaaaacctgtggcacaagag 42898387  T
Q  261 aata 264  Q
    ||||    
T  42898388 aata 42898391  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 237
Target Start/End: Original strand, 40040737 - 40040855
Alignment:
Q  119 agagctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttc 218  Q
    |||||||| ||||| || ||||| || || || || | ||||||||| || |||||||| || ||||| ||||||||||| || ||||  ||||| ||||    
T  40040737 agagctctaggagacctgacagggataaaaaagcactttagtagaaagcacggtgagaagaagtggaagtgtgataagtgttctaagaaatatgcagttc 40040836  T
Q  219 attctgattggaaagctca 237  Q
    | ||||||||||| |||||    
T  40040837 aatctgattggaaggctca 40040855  T

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