View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_4 (Length: 566)
Name: NF8661_low_4
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 17 - 557
Target Start/End: Original strand, 39391904 - 39392444
Alignment:
| Q |
17 |
aatataataccatagttaattattatatattcatacc-aaagtctaggaagacaattatatttaaaataaaattaactcacttcaacattgtcggttttt |
115 |
Q |
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| T |
39391904 |
aatataataccatagttaattattatatattcatacccaaagtttaggaagacaattaaatttaaaataaaattaactcacttcaacattgtcggttttt |
39392003 |
T |
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| Q |
116 |
ccatcagcaacagcaccgaattttgtgacatcataaattcctcctgcactaccattatcaaggaggctacgacccgatgcacctatcacgctaatgaaaa |
215 |
Q |
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| T |
39392004 |
ccatcagcaacagcaccgaattttgtgacatcataaattcctcctgcactaccattatcaaggaggctacgacccgatgcacctatcacgctaatgaaaa |
39392103 |
T |
|
| Q |
216 |
gaatgcctaagataaaaaggtttgttgtagtagccatattgatggtgctatttattaattcccagcttgaaaccttgattaaacaaaatgtttaagattt |
315 |
Q |
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| T |
39392104 |
gaatgcctaagataaaaaagtttgttgtcgtagccatattggtggtgatatttattaattcccagcttgaaaccttgattaaacaaaatgtttaagattt |
39392203 |
T |
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| Q |
316 |
taaaatgcagnnnnnnnnnatgatgttgtggttgctcatatggcaacctataactgcaatttagaaacccttcaccaatttggatgactcaattacatgt |
415 |
Q |
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| T |
39392204 |
taaaatgcag-ttttttttatgatgttgtggttgctcatatggcaacctataactgcaatttagaaacccttcaccaatttggatgactcaattacatgt |
39392302 |
T |
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| Q |
416 |
gacttgaagaatgatatttatacaagagaattatagatcatactctccctatgaagtctatttttggtcatcattttcctattaattaatctggatatta |
515 |
Q |
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| T |
39392303 |
gacttgaagaatggtatttatacaagagaattatagatcatactctccctatgaagtctatttttggtcatcattttcctattaattaatctggatatta |
39392402 |
T |
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| Q |
516 |
atggaagttttttgattttagattgtctaaatttagtattat |
557 |
Q |
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| T |
39392403 |
atggaagttttttgattttagattgtctaaatttagtattat |
39392444 |
T |
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