View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8661_low_45 (Length: 248)
Name: NF8661_low_45
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_45 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 42144396 - 42144620
Alignment:
| Q |
16 |
cataaacaaaagcattcctcttcataagaagccattcttttgaaaagcatgccttaaatagttcccattttgaaataccatatttttctttgactaatgc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42144396 |
cataaacaaaagcattcctcttcataagaagccattcctttgaaaagcatgccttaaatagttcccattttgaaataccatatttttctttgactaatgc |
42144495 |
T |
|
| Q |
116 |
tgctgggtgagtttgactcttattataaggaaccttaatctctgccgcaatttcctctccaatatgaaatgaatgaaagaaatcaacaaattcaggaact |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42144496 |
tgctgggtgagtttgactcttattataaggaaccttaatctctgccgcaatttcctctccaatatgaaatgaatgaaagaaatcaacaaattcaggaact |
42144595 |
T |
|
| Q |
216 |
gaaacatatctataaggttcatctc |
240 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
42144596 |
gaaacatatctataaggttcatctc |
42144620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 42156343 - 42156566
Alignment:
| Q |
16 |
cataaacaaaagcattcctcttcataagaagccattcttttgaaaagcatgccttaaatagttcccattttgaaataccatatttttctttgactaatgc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |
|
|
| T |
42156343 |
cataaacaaaagcattcctcttcataagaagccattctttagaaaagcatgccttaaatagttcccaatttgaaataccatatttttctttcactaacgc |
42156442 |
T |
|
| Q |
116 |
tgctgggtgagtttgactcttattataaggaaccttaatctctgccgcaatttcctctccaatatgaaatgaatgaaagaaatcaacaaattcaggaact |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42156443 |
agctgggtgagtttgtctcttattataaggaaccttaagttctgccgcaatttcttctccaatatgaaatgaatgaaagaaatcaacaaattcaggaact |
42156542 |
T |
|
| Q |
216 |
gaaacatatctataaggttcatct |
239 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
42156543 |
gaaacatatctataaggttcatct |
42156566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 42175515 - 42175739
Alignment:
| Q |
16 |
cataaacaaaagcattcctcttcataagaagccattcttttgaaaagcatgccttaaatagttcccattttgaaataccatatttttctttgactaatgc |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| || ||| |||||||||||||||||||||| |||||||| |
|
|
| T |
42175515 |
cataaacaaaagcattccttttcataagaagccattcctttgaaaagcatgccttaaatactttccaacttgaaataccatatttttctttcactaatgc |
42175614 |
T |
|
| Q |
116 |
tgctgggtgagtttgactcttattataaggaaccttaatctctgccgcaatttcctctccaatatgaaatgaatgaaagaaatcaacaaattcaggaact |
215 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
42175615 |
agctgggtgggtttgactcttattataaggaaccttaatctctgccgcaatttcctctccaatatgaaatgaatgaaagaactcaaaaaattcaggaact |
42175714 |
T |
|
| Q |
216 |
gaaacatatctataaggttcatctc |
240 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
42175715 |
gaaacatatctataaggttcatctc |
42175739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 42135283 - 42135487
Alignment:
| Q |
36 |
ttcataagaagccattcttttgaaaagcatgccttaaatagttcccattttgaaataccatatttttctttgactaatgctgctgggtgagtttgactct |
135 |
Q |
| |
|
|||||||| | ||||||| |||||| |||||||| |||| |||||| ||||| || ||| | |||||||| |||||||| |||||||||||||| |||| |
|
|
| T |
42135283 |
ttcataagtaaccattctcttgaaatacatgccttcaatatttcccactttgatattccaaacttttctttcactaatgcagctgggtgagtttgtctct |
42135382 |
T |
|
| Q |
136 |
tattataaggaaccttaatctctgccgcaatttcctctccaatatgaaatgaatgaaagaaatcaacaaattcaggaactgaaacatatctataaggttc |
235 |
Q |
| |
|
||| ||| ||||| ||| ||| | | ||| | ||||||||| |||||||||| |||| ||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
42135383 |
tatcataccgaaccataagctccgtcacaagctgctctccaatgtgaaatgaatcaaaggaatcaacaaattcagaaactgaaacatatttataaggttt |
42135482 |
T |
|
| Q |
236 |
atctc |
240 |
Q |
| |
|
||||| |
|
|
| T |
42135483 |
atctc |
42135487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 19539770 - 19539700
Alignment:
| Q |
45 |
agccattcttttgaaaagcatgccttaaatagttcccattttgaaataccatatttttctttgactaatgc |
115 |
Q |
| |
|
||||||||| |||||||||||||||| || ||||||||||| || || ||| | ||||| || |||||||| |
|
|
| T |
19539770 |
agccattctcttgaaaagcatgccttgaagagttcccatttggagattccaaacttttcctttactaatgc |
19539700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University