View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8661_low_48 (Length: 246)
Name: NF8661_low_48
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_48 |
 | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2821861 - 2821635
Alignment:
| Q |
1 |
caagacctttgttgaagttgtggaattttaaagaaaataatgagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgatac |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2821861 |
caagacctttgttgaagttgtgggattttaaagataagaatgagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgatac |
2821762 |
T |
|
| Q |
101 |
caaaggctaaacacaaatccctatttacagggatagacaaattcaaccttaaatcaagaacaaatcataatattaagatatataaactctaatcctaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2821761 |
caaaggctaaacacaaatccctatttacagggatagacaaattcaaccttaaatcaagaacaaatcataatattaagatatataaactctaatcctaaga |
2821662 |
T |
|
| Q |
201 |
gatactcttataaggttataaactaat |
227 |
Q |
| |
|
||| ||||||||||||||||||||||| |
|
|
| T |
2821661 |
gatgctcttataaggttataaactaat |
2821635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 48196871 - 48196786
Alignment:
| Q |
42 |
gagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctattta |
127 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| ||| ||||| ||| |||| ||||||| |||| |||||| | ||||||| |||| |
|
|
| T |
48196871 |
gagagaaaataataagaacctggaatattatttatattgactcgatagtaggttgatacaaaagactaaaccctaatccctgttta |
48196786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 46574573 - 46574483
Alignment:
| Q |
10 |
tgttgaagttgtggaattttaaagaaaataatgagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgatac |
100 |
Q |
| |
|
||||||||||||| | |||| | |||| ||| ||||| |||||||||||||||||| |||||||||||||| || ||| |||||||| |
|
|
| T |
46574573 |
tgttgaagttgtgagaatttagataaaagaataagagatgataataagaaccttgaatagtattgatactgactgaatagtactttgatac |
46574483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 23539823 - 23539739
Alignment:
| Q |
42 |
gagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctattta |
127 |
Q |
| |
|
||||||||||||||||| | |||||| ||||||||| ||||||||| |||| ||||| | ||||||||||| | |||||||||||| |
|
|
| T |
23539823 |
gagagaaaataataagacctttgaatattattgata-tgacttgatagtagcttgatccaaaaggctaaaccctaatccctattta |
23539739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 172
Target Start/End: Complemental strand, 40569804 - 40569674
Alignment:
| Q |
43 |
agagaaaataataagaaccttg-aatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctatttacagggatagacaaa |
141 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||| || || |||| ||||||| ||| || || | |||||||||||| || |||| || | |
|
|
| T |
40569804 |
agagaaaataataagaacctcggaatgttattgatactggctgaatagtagcttgatacaaaaaactcaattctaatccctatttatagcgatacacgga |
40569705 |
T |
|
| Q |
142 |
ttcaaccttaaatcaagaacaaatcataata |
172 |
Q |
| |
|
|||| | |||||||||||||||||| |||| |
|
|
| T |
40569704 |
ctcaatcctaaatcaagaacaaatcaaaata |
40569674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 16397967 - 16398052
Alignment:
| Q |
42 |
gagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctattta |
127 |
Q |
| |
|
||||||||||||||| |||||||||| || |||||||| | | || |||| ||||| |||||| ||||| || |||||||||||| |
|
|
| T |
16397967 |
gagagaaaataataaaaaccttgaatattgttgatactaattgaatagtagcttgatcccaaagactaaatactaatccctattta |
16398052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 10723775 - 10723853
Alignment:
| Q |
9 |
ttgttgaagttgtggaattttaaagaaaataatgagagaaaataataagaaccttgaatgttattgatactgacttgat |
87 |
Q |
| |
|
|||||||| ||||| ||||||| | ||| | ||||||||||||||||||| |||||| ||||||||| | ||||||| |
|
|
| T |
10723775 |
ttgttgaaattgtgcaattttagataaatggacgagagaaaataataagaactttgaatattattgataataacttgat |
10723853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 169
Target Start/End: Complemental strand, 32200 - 32103
Alignment:
| Q |
72 |
ttgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctatttacagggatagacaaattcaaccttaaatcaagaacaaatcata |
169 |
Q |
| |
|
|||||| ||||||||| |||| ||||||| ||| || || || |||||||||||| ||||||| | | | |||| | | |||||||||||||||||| |
|
|
| T |
32200 |
ttgataatgacttgatagtaggttgatacaaaaaactgaatactaatccctatttatagggatacatagactcaatcatgaatcaagaacaaatcata |
32103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 208
Target Start/End: Original strand, 42286518 - 42286593
Alignment:
| Q |
131 |
ggatagacaaattcaaccttaaatcaagaacaaatcataatattaagatatataaactctaatcctaagagatactct |
208 |
Q |
| |
|
||||| ||||| |||| |||||||||||| ||||||| |||| ||| | || |||||||| ||||||||||||||||| |
|
|
| T |
42286518 |
ggatacacaaactcaatcttaaatcaagaccaaatcaaaataataaca-at-taaactctgatcctaagagatactct |
42286593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University