View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_49 (Length: 242)
Name: NF8661_low_49
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 19175955 - 19176174
Alignment:
| Q |
1 |
ttttgaatcaagttgttaagctcaaatggttaatgagtttcactgaaagtcgaattgattggagtaactgagttcgaacttttattggaacaactattgt |
100 |
Q |
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| T |
19175955 |
ttttgaatcaagctgttaagctcaaatggttaatgagtttcactgaaagtcgaattgattggagtaactgagtttgaacttttattggaacaactattgt |
19176054 |
T |
|
| Q |
101 |
taagtcnnnnnnnnnn-gctttctatggttaaatcttgtaaattttcttctatagttgattactgttttagtaattttattttgttcattgagattcaca |
199 |
Q |
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| T |
19176055 |
taagacaaaaaaaaaaagctttctatggttaaatcttgtaaattttcttctatagttgattactgttttagtaattttattttgttcattgagattcaca |
19176154 |
T |
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| Q |
200 |
ttggtacttaatgatttgac |
219 |
Q |
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| T |
19176155 |
ttggtacttaatgatttgac |
19176174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 27035015 - 27035103
Alignment:
| Q |
134 |
cttgtaaattttcttctatagttgattactgttttagtaattttat---tttgttcattgagattcacattggtacttaatgatttgac |
219 |
Q |
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| T |
27035015 |
cttgtgaattttcttcttgagttaagtactgttttagcaatttattccttttgttcattgagatttacattggtacttatggatttgac |
27035103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 25385954 - 25385922
Alignment:
| Q |
27 |
tggttaatgagtttcactgaaagtcgaattgat |
59 |
Q |
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| T |
25385954 |
tggttaatgagtttcactgaaagtcgaactgat |
25385922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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