View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_5 (Length: 552)
Name: NF8661_low_5
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 348 - 542
Target Start/End: Complemental strand, 41918817 - 41918623
Alignment:
| Q |
348 |
ggttggcttcattttaatttgaacataaattaaaggtaattcaacttatggaagcttcctgatgctaataatagaatatgaagtcaattgagatgaaaat |
447 |
Q |
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| T |
41918817 |
ggttggcttcattttaatttgaacatatattaaaggtaattcaaacaatggaagcttcctgatgctaataatagaatatgaagtcaattgagatgaaaat |
41918718 |
T |
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| Q |
448 |
ataccttgaacagtatgcacttgatctaagaatgatataaccattttatggtagagttttcttatcatctcccaatacctcctctgatgtccatc |
542 |
Q |
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| T |
41918717 |
ataccttgaacagtatgcacttgatctaagaatgatataaccattttatggtagagttttcttatcatctcccaatacctcctcttatgttcatc |
41918623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 41918863 - 41918820
Alignment:
| Q |
34 |
ctaattgcaatcaaaacatttaaaaaacaacaatgattttataa |
77 |
Q |
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| T |
41918863 |
ctaattgtactcaaaacatttaaaaaacaacaatgattttataa |
41918820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 1688312 - 1688154
Alignment:
| Q |
62 |
aacaatgattttataattggtacatccattttaaaaatattttcacacaacaaatgaacttataactagaaattaacacttataa-atatagtcatattt |
160 |
Q |
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| T |
1688312 |
aacaatgatttgacaattggtacatgcattttaaaattattttgacccaacaaaagaacttattactagaaattaacacttaaaagatatagtcatattt |
1688213 |
T |
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| Q |
161 |
aatcaaaaagccattgatatctatgttgagcaaaa-atttactattatgatatcaatga |
218 |
Q |
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| T |
1688212 |
aatcaaaaagccattgatatctattttgagcaaaagatttaatattaggctatcaatga |
1688154 |
T |
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