View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8661_low_54 (Length: 240)
Name: NF8661_low_54
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_54 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] scaffold0312 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 6736674 - 6736451
Alignment:
| Q |
18 |
actttgatattggaagtattcttttcatttagcatgaatgagctttcaaaggatgaaaattttagtttaaaaattgtttgggtaaagaccgtcacttacc |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6736674 |
actttgatattggaagtattcttttt-tttagcatgaatttgctttcaaaggatgaaacttttagtttaaaaattgtttgggtaaagaccgtcacttacc |
6736576 |
T |
|
| Q |
118 |
cattatttctactttgtttgtcatgctctcattgaattcttgtgactcaccatttctttggtttca--nnnnnnnaaaattcaaagattgcaaaagatta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6736575 |
cattatttctactttgtttgtcatgctcccgttgaattcttgtgactcaccatttctttggtttcattttttttttaaattcaaagattgcaaaagatta |
6736476 |
T |
|
| Q |
216 |
atctcatggagttttcaggtttacc |
240 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
6736475 |
atctcatggagttttcaggtttacc |
6736451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 2464460 - 2464601
Alignment:
| Q |
45 |
tttagcatgaatgagctttcaaaggatgaaaattttagtttaaaaattgtttgggtaaagaccg---------tcacttacccattatttctactttgtt |
135 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||| |||||| |||||| ||||||||| ||||| | ||||||| || |||||||| |
|
|
| T |
2464460 |
tttagcatgaatgagttttcaaaggatgaaatttttagttaaaaaatggtttggataaagaccggtgaaaacttcactcatccattatgtccactttgtt |
2464559 |
T |
|
| Q |
136 |
tgtcatgctctcattgaattcttgtgactcaccatttctttg |
177 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2464560 |
tgtcatgctcccattgaattcttgtgactcaccatttctttg |
2464601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 29935054 - 29935280
Alignment:
| Q |
18 |
actttgatattggaagtattcttttcatttagcatgaatgagctttcaaaggatgaaaattttagtttaaaaattgtttgggtaaagaccgtcact---- |
113 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29935054 |
actttgatattggaagtattcttttt-tttagcatgaatgagctttcaaatgatgaaacttttagtttaaaaattgtttgggtaaagaccgtcacttacc |
29935152 |
T |
|
| Q |
114 |
--tacccattatttctactttgtttgtcatgctctcattgaattcttgtgactcaccatttctttggtttcannnnnnnaaaattcaaagattgcaaaag |
211 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29935153 |
catacccattatttttactttgtttgtcatgctcccattgaattcttgtgacttaccatttctttggtttcattttttt-aaattcaaagattgcaaaag |
29935251 |
T |
|
| Q |
212 |
attaatctcatggagttttcaggtttacc |
240 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
29935252 |
attaatctcatggagttttcaggtttacc |
29935280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 2743939 - 2744164
Alignment:
| Q |
18 |
actttgatattggaagtattcttttcatttagcatgaatgagctttcaaaggatgaaaattttagtttaaaaattgtttgggtaaagaccgtcact---- |
113 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2743939 |
actttgatattggaagtattcttttt-tttagcatgaatgagttttcaaatgatgaaacttttagtttaaaaattgtttgggtaaagaccgtcacttacc |
2744037 |
T |
|
| Q |
114 |
--tacccattatttctactttgtttgtcatgctctcattgaattcttgtgactcaccatttctttggtttcannnnnnnaaaattcaaagattgcaaaag |
211 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2744038 |
catacccattatttttactttgtttgtcatgctcccattgaattcttgtgactcaccatttctttggtttcattttttg--aattcaaagattgcaaaag |
2744135 |
T |
|
| Q |
212 |
attaatctcatggagttttcaggtttacc |
240 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2744136 |
attaatctcatggagttttcaggtttacc |
2744164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 232
Target Start/End: Original strand, 11951637 - 11951829
Alignment:
| Q |
49 |
gcatgaatgagctttcaaaggatgaaaattttagtttaaaaattgtttgggtaaagaccg---------tcacttacccatta--tttctactttgtttg |
137 |
Q |
| |
|
||||||||||| || |||||||||||| |||||||||||||||||||||| ||||||||| ||| ||| | |||| | || |||||||||| |
|
|
| T |
11951637 |
gcatgaatgagtttccaaaggatgaaatttttagtttaaaaattgtttggataaagaccggtgaaattttcatttatctattaaatgtccactttgtttg |
11951736 |
T |
|
| Q |
138 |
tcatgctctcattgaattcttgtgactcaccatttctttggtttcannnnnnnaaaattcaaagattgcaaaagattaatctcatggagttttca |
232 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
11951737 |
tcatgctcccattgaattattgtgactcaccatttctttggtttcattttttc--aattcaaaggttgcaaatgattaatctcatggagttttca |
11951829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 28173456 - 28173522
Alignment:
| Q |
117 |
ccattatttctactttgtttgtcatgctctcattgaattcttgtgactcaccatttctttggtttca |
183 |
Q |
| |
|
||||||| || ||||||||||| ||| | ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28173456 |
ccattatgtccactttgtttgttatgaccccattgaattcttgtgactcaccatttctttgatttca |
28173522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 45227704 - 45227934
Alignment:
| Q |
18 |
actttgatattggaagtattcttttcatttagcatgaatgagctttcaaaggatgaaaattttagtttaaaaattgtttgggtaaagaccg--------- |
108 |
Q |
| |
|
|||||| ||||| ||||||| |||| ||||| ||||||||||||| |||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
45227704 |
actttgctattgcaagtattatttt---ttagcgtgaatgagctttcgaaggatgaaattgttagtttaaaaattgtttgggtaaagaccggtgaaattt |
45227800 |
T |
|
| Q |
109 |
tcacttacccattattt-ctactttgtttgtcatgctctcattgaattcttgtgactcaccatttctttggtttca-nnnnnnnaaaattcaaagattgc |
206 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | | ||||| ||||||| |
|
|
| T |
45227801 |
tcacttacccattattttccactttgtttgtcatgctcccattgaattcttgtgactcaccatttctttggttttatttttttttagattcacagattgc |
45227900 |
T |
|
| Q |
207 |
aaaagattaatctcatggagttttcaggtttacc |
240 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |
|
|
| T |
45227901 |
aaaggattaatctcatggagttttcaggtttacc |
45227934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 29896811 - 29896669
Alignment:
| Q |
45 |
tttagcatgaatgagctttcaaaggatgaaaattttagtttaaaaat--tgtttgggtaaagaccg---------tcacttacccattatttctactttg |
133 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||| || |||| ||||||||| ||||| | ||||||| || |||| | |
|
|
| T |
29896811 |
tttagcatgaatgagctttaaaaggatgaat-ttttagtttaaaaaaaatggttggataaagaccggtgaaaacatcactcatccattatgtccacttgg |
29896713 |
T |
|
| Q |
134 |
tttgtcatgctctcattgaattcttgtgactcaccatttctttg |
177 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| |||||||||| |
|
|
| T |
29896712 |
tttgtcatgctcccattgaattcttgtgattcatcatttctttg |
29896669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 49 - 183
Target Start/End: Original strand, 18990 - 19133
Alignment:
| Q |
49 |
gcatgaatgagctttcaaaggatgaaaattttagtttaaaaattgtttgggtaaagaccg---------tcacttacccattatttctactttgtttgtc |
139 |
Q |
| |
|
||||||||||| || |||| ||||||| |||||||||||||||||||||||||||||||| |||| || ||||||| || |||||||||||| |
|
|
| T |
18990 |
gcatgaatgagtttccaaatgatgaaatttttagtttaaaaattgtttgggtaaagaccggtgaaattttcacctatccattatgtccactttgtttgtc |
19089 |
T |
|
| Q |
140 |
atgctctcattgaattcttgtgactcaccatttctttggtttca |
183 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19090 |
atgctctcattgaattattgtgactcaccatttctttggtttca |
19133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 49 - 183
Target Start/End: Complemental strand, 411580 - 411437
Alignment:
| Q |
49 |
gcatgaatgagctttcaaaggatgaaaattttagtttaaaaattgtttgggtaaagaccg---------tcacttacccattatttctactttgtttgtc |
139 |
Q |
| |
|
||||||||||| || |||| ||||||| |||||||||||||||||||||||||||||||| |||| || ||||||| || |||||||||||| |
|
|
| T |
411580 |
gcatgaatgagtttccaaatgatgaaatttttagtttaaaaattgtttgggtaaagaccggtgaaattttcacctatccattatgtccactttgtttgtc |
411481 |
T |
|
| Q |
140 |
atgctctcattgaattcttgtgactcaccatttctttggtttca |
183 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
411480 |
atgctctcattgaattattgtgactcaccatttctttggtttca |
411437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 26300230 - 26300167
Alignment:
| Q |
45 |
tttagcatgaatgagctttcaaaggatgaaaattttagtttaaaaattgtttgggtaaagaccg |
108 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||| ||||| |
|
|
| T |
26300230 |
tttagcatgaatgagttttcaaaggatgaaatttttagtttaaaaattgtttggataatgaccg |
26300167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 23879705 - 23879753
Alignment:
| Q |
128 |
actttgtttgtcatgctctcattgaattcttgtgactcaccatttcttt |
176 |
Q |
| |
|
||||||||| ||||||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
23879705 |
actttgtttatcatgctcttgttgaatttttgtgactcaccctttcttt |
23879753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University