View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_57 (Length: 237)
Name: NF8661_low_57
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36222973 - 36222753
Alignment:
| Q |
1 |
aacatagtttacaatcacattgatttctctttcttctcttttgatttctcctaattctctcccaatcttgattgcttgtgaatgaagtgatctctgctgc |
100 |
Q |
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| T |
36222973 |
aacatagtttacaatcacattgatttctctttcttctctcttgatttctcctaattctctcccaatcttgattgcttgtgaatgaagtgatctcttctgc |
36222874 |
T |
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| Q |
101 |
actaacaacttcaatttcaggactatttaaacttttgtttctaggcttttagtatataactgtatagatgagaaaagaatagaattataaatggggtgat |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36222873 |
gctaacaacttcaatttcagtactatttaaacttttgtttctaggcttctagtatataactgtatagatgagaaaagtatagaattataaatggggtgat |
36222774 |
T |
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| Q |
201 |
gcatgatttggagctcttaat |
221 |
Q |
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|||||||||||||||||||| |
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| T |
36222773 |
acatgatttggagctcttaat |
36222753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 36227018 - 36226925
Alignment:
| Q |
1 |
aacatagtttacaatcacattgatttctctttcttctcttttgatttctcctaattctctcccaatcttgattgcttgtgaatgaagtgatctct |
95 |
Q |
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|||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
36227018 |
aacatagtttacaatcacattgatctctctttcttctctctt-atttcccctaattctctcccaatctcgattgcttgtgaatgaagtaatctct |
36226925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 36226909 - 36226854
Alignment:
| Q |
166 |
agatgagaaaagaatagaattataaatggggtgatgcatgatttggagctcttaat |
221 |
Q |
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|||||||||||||||| ||||||||| |||||||| |||||||||||||| ||||| |
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| T |
36226909 |
agatgagaaaagaatataattataaacggggtgattcatgatttggagctgttaat |
36226854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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