View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_61 (Length: 229)
Name: NF8661_low_61
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 960334 - 960550
Alignment:
| Q |
5 |
acacataagataagttctctcatctcaaccgattttttcatatgcaagagctggaaattgaactctaaccacttatttaaggagctctaatctcttacca |
104 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||| | ||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
960334 |
acacataagataagttctctcatctcaatccattttttcatatgcaagagctgaagattgaaccctaaccacttgtttaaggagctctaatctcttacca |
960433 |
T |
|
| Q |
105 |
tttaaatcaatttattgttggattaaaagtataattgtaaccctttatgtgaagctgagttttggagctactctaaagagaaagcagtattatactccaa |
204 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||| || |
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| T |
960434 |
tttaaaccaatttattgttggattaaaagtataa-tgtaaccatttatatgaagttgagttttggagcttctctaaagagaaagcagtattatacttaaa |
960532 |
T |
|
| Q |
205 |
tttattgttcatctcact |
222 |
Q |
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|||||||||||| ||||| |
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| T |
960533 |
tttattgttcatttcact |
960550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 125
Target Start/End: Complemental strand, 5632921 - 5632889
Alignment:
| Q |
93 |
aatctcttaccatttaaatcaatttattgttgg |
125 |
Q |
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| T |
5632921 |
aatctcttaccatttaaatcaatttattgttgg |
5632889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 9798076 - 9798034
Alignment:
| Q |
81 |
ttaaggagctctaatctcttaccatttaaatcaatttattgtt |
123 |
Q |
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| T |
9798076 |
ttaaggagctcaaatctcttaccacttaaattaatttattgtt |
9798034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 125
Target Start/End: Complemental strand, 6743256 - 6743224
Alignment:
| Q |
93 |
aatctcttaccatttaaatcaatttattgttgg |
125 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
6743256 |
aatctcttaccatttgaatcaatttattgttgg |
6743224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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