View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_62 (Length: 226)
Name: NF8661_low_62
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 17867169 - 17867383
Alignment:
| Q |
1 |
ggcggcaggccaaaaacaattagatgcctgcacgtatgcatacgatgcgaagaaaagagggtattaaacaagagatagactctaataaaactagccactt |
100 |
Q |
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| T |
17867169 |
ggcggcaggccaaaaacaattagatgcctgcacgtatgcatacgatgcgaaggaaagagggtattaaacaagagatagactctaataaaactagccactt |
17867268 |
T |
|
| Q |
101 |
ttnnnnnnntaagtattcacattattttccatcaccgacaaaaagataactgattaggaaaattaaagttatcatacaaaacagcatacctgatgacaga |
200 |
Q |
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| T |
17867269 |
ttaaaaaa-taagcattcacattattttccatcaccgacaaaaagataactgattaggaaaattaaagttatcatacaaaacagcatacctgatgacaga |
17867367 |
T |
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| Q |
201 |
tctcacaagtgatgtc |
216 |
Q |
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|||||||||||||||| |
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| T |
17867368 |
tctcacaagtgatgtc |
17867383 |
T |
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