View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_65 (Length: 221)
Name: NF8661_low_65
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_65 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 10289733 - 10289954
Alignment:
| Q |
1 |
agttcgaaaaaatattcacactgcattgaaaa-aatattattggtcgatataattgcgtgtgaagtaaaaacataataaaacaacattaaccaccttttt |
99 |
Q |
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| T |
10289733 |
agttcgaaaaaatattcacactgcattgaaaaaaatattattggtcgatataattgcgtgtgaagtaaaaacataataaaacaacattaaccaccttttt |
10289832 |
T |
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| Q |
100 |
cttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggcac |
199 |
Q |
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| T |
10289833 |
cttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggcac |
10289932 |
T |
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| Q |
200 |
aacagtatcgtttcttgctgac |
221 |
Q |
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|||||||| ||||||||||||| |
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| T |
10289933 |
aacagtattgtttcttgctgac |
10289954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 26 - 208
Target Start/End: Complemental strand, 9747748 - 9747568
Alignment:
| Q |
26 |
ttgaaaaaatattattggtcgatataattgcgtgtgaagtaaaaacataataaaacaacattaaccacctttttcttgaatcaaaactatggtatcattg |
125 |
Q |
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| T |
9747748 |
ttgaaaaaagattatttgtcgataaaattgcacatgaagtaagaacataataaaacaacattaaccggctttt-cttaaatcaaaactatggtatcattg |
9747650 |
T |
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| Q |
126 |
ctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggcacaacagtatc |
208 |
Q |
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| T |
9747649 |
ctcaatgcttgaaacttaagaattctatcgtaccatttagaccagagctgatgtctcggaaaac-ttgtggcacagcagtatc |
9747568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 10297933 - 10298091
Alignment:
| Q |
47 |
atataattgcgtgtgaagtaaaaacataataaaacaacattaaccacctttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaaga |
146 |
Q |
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| T |
10297933 |
atataattgcacgggaagtaaaagcataataaaacaacattaaccgccttttt-ttgtatcaaaactatggtatgaat--------------acttaaga |
10298017 |
T |
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| Q |
147 |
attttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggcacaacagtatcgtttcttgctgac |
221 |
Q |
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| T |
10298018 |
attttattgtaccatttaaaccagagctgatgtctctgaaaac-ttgtggcacaacagtatcgtctcttgatgac |
10298091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 34694209 - 34694292
Alignment:
| Q |
98 |
ttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtct |
181 |
Q |
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| T |
34694209 |
ttcttgaatcaaaactatagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagctgatgtct |
34694292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 34716621 - 34716704
Alignment:
| Q |
98 |
ttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtct |
181 |
Q |
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| T |
34716621 |
ttcttgaatcaaaactatagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagctgatgtct |
34716704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 37744192 - 37744082
Alignment:
| Q |
96 |
ttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtg |
195 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||||| |||| ||| |||| ||||| |
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| T |
37744192 |
ttttcttaaatcaaaactaaagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagttgatttctcggaaa--cttgtg |
37744095 |
T |
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| Q |
196 |
gcacaacagtatc |
208 |
Q |
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| T |
37744094 |
gcacaacagtatc |
37744082 |
T |
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