View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_7 (Length: 514)
Name: NF8661_low_7
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 72 - 501
Target Start/End: Original strand, 8134852 - 8135285
Alignment:
| Q |
72 |
gtgtcgatacgtcagtgttgtatacaatgtttgtttatgtcaatatcatgtgtggtgtttgatatcattgatcgattagaaatagtgtttgattatatgt |
171 |
Q |
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| T |
8134852 |
gtgtcgatacgtcagtgttgtatacaatgtttgtttatgtcaatatcatgtgtggtgtttgatatcattgattgattagaaatagtgtttgattatatgt |
8134951 |
T |
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| Q |
172 |
tgcactgaaatttaagattgaaaatgtgtttggtgtccgaggcatgctaatgttggacactaacacatcacccacacatgtacattcaatcgcnnnnnnn |
271 |
Q |
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| T |
8134952 |
tgcactgaaatttcagattgaaaatgtgtttggcgtccaaggcatgctaatgttggacactaacacatcacccacacatgtacattcaatcgcttttttt |
8135051 |
T |
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| Q |
272 |
nn----cttaaattattagaagtgtatatacgtatttatcaatgttgtgtctgatatatgtgtcgacgtgtcctatgtagctccgaaactttagattgaa |
367 |
Q |
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| T |
8135052 |
ttttctcttaaattattagaagtgtatatgcgtatgtatcaatgttgtgtctgatatacgtgtcgacgtgtcctatgtagctccgaaactttagattgaa |
8135151 |
T |
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| Q |
368 |
aacgtgtctagcatccgatatgacaccaaaacatgttgttacattcaattagttctatttttaatattacattgtcggtatgttagtatcgtgtaccgcg |
467 |
Q |
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| T |
8135152 |
gacgtgtctagcatccgatatgacaccaaaacatgttgttacattcaattagttctatttttaatattatagtgtcggcatgttagtatcgtgtaccgcg |
8135251 |
T |
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| Q |
468 |
tgatgaatatttcacaatcttctgcagttcatct |
501 |
Q |
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| T |
8135252 |
tgatgaatatttcacaatcttctgcagttcatct |
8135285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 8134582 - 8134648
Alignment:
| Q |
187 |
gattgaaaatgtgtttggtgtccgaggcatgctaatgttggacactaacacatcacccacacatgta |
253 |
Q |
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| T |
8134582 |
gattgaatatatgtctggtgtccgagacatgctagtgttggatactaacacaacatccacgcatgta |
8134648 |
T |
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