View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_low_9 (Length: 492)
Name: NF8661_low_9
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 16 - 484
Target Start/End: Complemental strand, 15245154 - 15244686
Alignment:
| Q |
16 |
atgttttgtatacaatcgtgcaaaatacttttgctcatgttaattcgtctggtgtatatatatatggaaaacatttgaagagagttcactctttttattt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15245154 |
atgttttgtatacaatcgtgcaaaatacttttgctcatgttcatttgtctggtgtatatatatatggaaaacgtttgaagagagttcactctttttattt |
15245055 |
T |
|
| Q |
116 |
tcaacatgaaatcaccataattctggtgtcaaaacttgcgatttcactagatcagtctcaagctatgcataaccattcccaagccttttgaatttgtata |
215 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15245054 |
tcaacaagaaatcaccataattctggtgtcaaaacttgcgatttcactagatcagtctcaagctatgcataaccattcccaagccttttgaatttgtata |
15244955 |
T |
|
| Q |
216 |
gataatcatttggatctcttttacacaatctgccattgaaggccgctcgttactttcagttcgtacacatcttgatgccagattagcaaacatgactata |
315 |
Q |
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| T |
15244954 |
gataatcatttggatctcttttacacaatctgccattgaaggccgctcgttactttcagttcgtacgcatcttgatgccagattagcaaacatgactata |
15244855 |
T |
|
| Q |
316 |
gactgaatggtgtaagaacttcgagccatctctggatcaatcaccttacaaagcttcttgcggtcattaagtatgtgcctcacctgcatataatgcaaaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15244854 |
gactgaatggtgtaagaacttcgagccatctctggatcaatcaccttacaaagcttcttgcggtcattaagtatgtgcctcacctgcatataatgcaaaa |
15244755 |
T |
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| Q |
416 |
catattaaagtcttgcttctgtttatgtccaaatgttttgaacttgttagtttaggatttgttcttctc |
484 |
Q |
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| T |
15244754 |
catattaaagtcttgcttctatttatgtccaaaagttctgaacttgttagtttaggatttgttcttctc |
15244686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 130 - 437
Target Start/End: Complemental strand, 15249536 - 15249225
Alignment:
| Q |
130 |
ccataattctggtgtcaaaacttgcgatttcactagatcagtctcaagctatgcataaccattcccaagcc---ttttgaatttgtatagataatcattt |
226 |
Q |
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|||||||||| ||| |||||| ||||||||| |||||||||||||| || |||| ||||||||||||| ||||||| ||| |||||| |||||| |
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| T |
15249536 |
ccataattctaatgtgtaaacttttgatttcacttgatcagtctcaagcaattcatagccattcccaagcccccttttgaacttgcgtagatagtcattt |
15249437 |
T |
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| Q |
227 |
ggatctcttttacacaatctgccattgaaggccgctcgttactttcagttcgtacacatcttgatgccagattagcaaacatgactatagactgaatggt |
326 |
Q |
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| T |
15249436 |
gaatgtcttttacacaatccaccattgaatgccactcattacgttcagttcgtacacatctcgatgccagattggcaaaaatgaatatagattgaatgga |
15249337 |
T |
|
| Q |
327 |
gtaagaacttcgagccatctctggatcaatcaccttacaaagcttcttgcggtcattaagtatgtgcctcacctgcatat-aatgcaaaacatattaaag |
425 |
Q |
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||||||| |||||| ||||||| |||| ||||||| || ||||||| || ||| ||| |||||||||||||||||| ||| |||| ||||||||| || |
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| T |
15249336 |
gtaagaatttcgagtcatctctagatctatcacctcacgaagcttcctgtggttattcagtatgtgcctcacctgcttataaatgtgaaacatattgaac |
15249237 |
T |
|
| Q |
426 |
tcttgcttctgt |
437 |
Q |
| |
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||||||| |||| |
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| T |
15249236 |
tcttgctgctgt |
15249225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 15249708 - 15249647
Alignment:
| Q |
17 |
tgttttgtatacaatcgtgcaaaatacttttgctcatgttaattcgtctggtgtatatatat |
78 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||| || |||||||||||||| |
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| T |
15249708 |
tgttttgtatacaattgtgcaaaatacttgtgctcatgttaattggtttggtgtatatatat |
15249647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 160 - 364
Target Start/End: Complemental strand, 26518020 - 26517816
Alignment:
| Q |
160 |
cactagatcagtctcaagctatgcataaccattcccaagccttttgaatttgtatagataatcatttggatctcttttacacaatctgccattgaaggcc |
259 |
Q |
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||||||| || ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||| ||||||||| ||||||||| | |
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| T |
26518020 |
cactagagcattcttaagctatgcataaccattcccaagccttttgtatttgtatagataatcatttgaatttctttgacacaatctttcattgaaggtc |
26517921 |
T |
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| Q |
260 |
gctcgttactttcagttcgtacacatcttgatgccagattagcaaacatgactatagactgaatggtgtaagaacttcgagccatctctggatcaatcac |
359 |
Q |
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||||||||| |||| | ||||||| ||||| ||||| ||||||||| ||| || | ||||||||||||| ||||||||||||||| |||||||| |
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| T |
26517920 |
tctcgttactctcaggatggacacatcgcgatgcaagattggcaaacatggatattgattcaatggtgtaagaatttcgagccatctctgcatcaatcat |
26517821 |
T |
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| Q |
360 |
cttac |
364 |
Q |
| |
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||||| |
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| T |
26517820 |
cttac |
26517816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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