View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8662_high_1 (Length: 570)
Name: NF8662_high_1
Description: NF8662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8662_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 5520146 - 5519710
Alignment:
| Q |
1 |
ctattaatttgtgtattatttactaaaatgacttgtattatataagaaactgatgaagtattatttctaaccatattaatactca---attaaacaggag |
97 |
Q |
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| T |
5520146 |
ctattaatttgtgtattatttactaaaatgacttgtattatataagaaactgatgaagtattatttctaaccatattaatactcatgaattaaacagaaa |
5520047 |
T |
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| Q |
98 |
catgtgacaatgaaggcaaatgcaaagtttgcaattccaaggaatagcctcaccaacacaaacacaaagtgttcacaaaattgtgatgttgtgccaatta |
197 |
Q |
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| T |
5520046 |
catgtgacaatgaaggcaaatacaaagtttgcaattccaaggaatagcctcaccaacacaaacacaaagtgttcacaaaattgtgatgttgtgccaatta |
5519947 |
T |
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| Q |
198 |
agggtagcccagagagatcaacaagatctatacaaatttctgaagaagctcaaagtattgatgctgcaaaagagattggaagtctcatgtataaagacta |
297 |
Q |
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| T |
5519946 |
agggtagcccagagagatcaacaagatctatacaaatttctgaagaagctcaaagtattgatgctgcaaaagagattggaagtctcatgtataaagacta |
5519847 |
T |
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| Q |
298 |
tagtcataagggaaaaccatcccataggccacccatcaataatcaccaacctaataatccatagtgtataatatt---atttcaggttcacattcaattt |
394 |
Q |
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| T |
5519846 |
tagtcataagggaaaaccatcccataggccacccatcaataaccaccaacctaataatccatagtgtataatatttcaggttcatgatcatattcaattt |
5519747 |
T |
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| Q |
395 |
tgtactaagttgctagcaacttatagtaatcacctag |
431 |
Q |
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| T |
5519746 |
tgtaccaagttgctagcaacttatagtaatcacctag |
5519710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 471 - 557
Target Start/End: Complemental strand, 5519670 - 5519584
Alignment:
| Q |
471 |
tttcttttttcatgtaccaaaaagtttgtttgtttgtttcaaaatattaaaaagagatatatgtagactgcatgcgttttcagtatt |
557 |
Q |
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| T |
5519670 |
tttcttttttcatgtgccaaaaagtttgtttgtttgtttccaaatattaaaaagagatatatgtagactgcatgcattttcagtatt |
5519584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 5513378 - 5513342
Alignment:
| Q |
148 |
caccaacacaaacacaaagtgttcacaaaattgtgat |
184 |
Q |
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| T |
5513378 |
caccaacacaaacacaaagtgttcaaaagattgtgat |
5513342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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