View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8662_high_3 (Length: 447)
Name: NF8662_high_3
Description: NF8662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8662_high_3 |
 | |
|
| [»] scaffold0514 (1 HSPs) |
| | |
|
| [»] scaffold0470 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0514 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: scaffold0514
Description:
Target: scaffold0514; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 16 - 432
Target Start/End: Complemental strand, 936 - 520
Alignment:
| Q |
16 |
atcatggaggttcaacggaaaccgtatcgaataaggaatcaaagaaaggatggagaaaggtattagagaagatacggagttggttgtcctacaaagacag |
115 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
936 |
atcatggaggttcaacagaaaccgcaccgaataaggaatcaaagaaaggatggagaaatgtattagagaagatacggagttggttgtcctacaaagatag |
837 |
T |
|
| Q |
116 |
ggacaaatggttggacgatatgagagggaacttgggtttaatagcgacagtcatcgcaacaatgacatttcaaatgattttaaatccacccggtggcgtt |
215 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
836 |
ggacaaatggttggaggatatgagagggaacttgggtttaatagcgacagtcatcgcaacaatgacatttcaaatgattttaaatccacccggtggcgtt |
737 |
T |
|
| Q |
216 |
atgtcgattaaagatggggaaaatccacccagtaccgacgcaagtccacccggtaccaacgcaaatccaccagatgccaaccgttatgacaaaatttgta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
736 |
atgtcgattaaagatggggaaaatccacccagtaccgacgcaagtccacccggtaccaacgcaaatccaccagatgccaaccgttatgacaaaatttgta |
637 |
T |
|
| Q |
316 |
cttttgtctacgacaaaattctatgtccaggtgaagctgtcttagctgttagggactctagtggatatcttcagttccttatttcgaacacaatttgttt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
636 |
cttttgtctacgacaaaattctatgtccaggtgaagctgtcttagctgttagggactctagtggatatcttcagttccttatttcgaacacaatttgttt |
537 |
T |
|
| Q |
416 |
tattgcatcactaagtg |
432 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
536 |
tattgcatcactaagtg |
520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 16 - 432
Target Start/End: Original strand, 10706 - 11122
Alignment:
| Q |
16 |
atcatggaggttcaacggaaaccgtatcgaataaggaatcaaagaaaggatggagaaaggtattagagaagatacggagttggttgtcctacaaagacag |
115 |
Q |
| |
|
|||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10706 |
atcatggaggttcaacagaaaccgcactgaataaggaatcaaagaaaggatggagaaaggtattagagaagatacggagttggttgtcctacaaagtcag |
10805 |
T |
|
| Q |
116 |
ggacaaatggttggacgatatgagagggaacttgggtttaatagcgacagtcatcgcaacaatgacatttcaaatgattttaaatccacccggtggcgtt |
215 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10806 |
ggacaaatggttggaggatatgagagggaacttgggtttaatagcgacagtcatcgcaacaatgacatttcaaatgattttaaatccacccggtggcgtt |
10905 |
T |
|
| Q |
216 |
atgtcgattaaagatggggaaaatccacccagtaccgacgcaagtccacccggtaccaacgcaaatccaccagatgccaaccgttatgacaaaatttgta |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| || ||||||||||||||||| |
|
|
| T |
10906 |
atgtcgattaaagatggggaaaatccacccagtaccgacgcaagtccacccagtaccaacgcaaatccaccagaagccgacaattatgacaaaatttgta |
11005 |
T |
|
| Q |
316 |
cttttgtctacgacaaaattctatgtccaggtgaagctgtcttagctgttagggactctagtggatatcttcagttccttatttcgaacacaatttgttt |
415 |
Q |
| |
|
||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11006 |
cttttgtctacaaagaacgtctatgtccaggtgaagctgtcttagctgttagggactctagtggatatcttcggttccttatttcgaacacaatttgttt |
11105 |
T |
|
| Q |
416 |
tattgcatcactaagtg |
432 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
11106 |
tattgcatcactaagtg |
11122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 16 - 432
Target Start/End: Original strand, 6621288 - 6621704
Alignment:
| Q |
16 |
atcatggaggttcaacggaaaccgtatcgaataaggaatcaaagaaaggatggagaaaggtattagagaagatacggagttggttgtcctacaaagacag |
115 |
Q |
| |
|
|||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6621288 |
atcatggaggttcaacagaaaccgcactgaataaggaatcaaagaaaggatggagaaaggtattagagaagatacggagttggttgtcctacaaagtcag |
6621387 |
T |
|
| Q |
116 |
ggacaaatggttggacgatatgagagggaacttgggtttaatagcgacagtcatcgcaacaatgacatttcaaatgattttaaatccacccggtggcgtt |
215 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6621388 |
ggacaaatggttggaggatatgagagggaacttgggtttaatagcgacagtcatcgcaacaatgacatttcaaatgattttaaatccacccggtggcgtt |
6621487 |
T |
|
| Q |
216 |
atgtcgattaaagatggggaaaatccacccagtaccgacgcaagtccacccggtaccaacgcaaatccaccagatgccaaccgttatgacaaaatttgta |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| || ||||||||||||||||| |
|
|
| T |
6621488 |
atgtcgattaaagatggggaaaatccacccagtaccgacgcaagtccacccagtaccaacgcaaatccaccagaagccgacaattatgacaaaatttgta |
6621587 |
T |
|
| Q |
316 |
cttttgtctacgacaaaattctatgtccaggtgaagctgtcttagctgttagggactctagtggatatcttcagttccttatttcgaacacaatttgttt |
415 |
Q |
| |
|
||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6621588 |
cttttgtctacaaagaacgtctatgtccaggtgaagctgtcttagctgttagggactctagtggatatcttcggttccttatttcgaacacaatttgttt |
6621687 |
T |
|
| Q |
416 |
tattgcatcactaagtg |
432 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6621688 |
tattgcatcactaagtg |
6621704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Original strand, 6595477 - 6595890
Alignment:
| Q |
19 |
atggaggttcaacggaaaccgtatcgaataaggaatcaaagaaaggatggagaaaggtattagagaagatacggagttggttgtcctacaaagacaggga |
118 |
Q |
| |
|
||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
6595477 |
atggaggttcaacagaaaccgcaccgaataaggaatcaaagaaaggatggagaaaggtaatagagaagatacggagttggttgtcctacaaaaacaagga |
6595576 |
T |
|
| Q |
119 |
caaatggttggacgatatgagagggaacttgggtttaatagcgacagtcatcgcaacaatgacatttcaaatgattttaaatccacccggtggcgttatg |
218 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6595577 |
caaatggttggaggatatgagagggaacttgggtttaatagcgacagtcatcgcaacaatgacatttcaaatgattttaaatccacccggtggcgttatg |
6595676 |
T |
|
| Q |
219 |
tcgattaaagatggggaaaatccacccagtaccgacgcaagtccacccggtaccaacgcaaatccaccagatgccaaccgttatgacaaaatttgtactt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
6595677 |
tcgattaaagatggggaaaatccacccagtaccgacgcaagtccacccagtactaacgcaaatccaccagatgccgacaattatgacaaaatttgtactt |
6595776 |
T |
|
| Q |
319 |
ttgtctacgacaaaattctatgtccaggtgaagctgtcttagctgttagggactctagtggatatcttcagttccttatttcgaacacaatttgttttat |
418 |
Q |
| |
|
|||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6595777 |
ttgtctacaaagaacgtctatgtccaggtgaagctgtcttagctgttagggactctagtggatatcttgagttccttatttcgaacacaatttgttttat |
6595876 |
T |
|
| Q |
419 |
tgcatcactaagtg |
432 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6595877 |
tgcatcactaagtg |
6595890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 50 - 431
Target Start/End: Original strand, 6840855 - 6841236
Alignment:
| Q |
50 |
ggaatcaaagaaaggatggagaaaggtattagagaagatacggagttggttgtcctacaaagacagggacaaatggttggacgatatgagagggaacttg |
149 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||| |
|
|
| T |
6840855 |
ggaaccaaagaaaggttggagaaaggtattagaagggatagggagttggttgtcctacaaagacaaggagaaatggttggatgatatgcgagggaacttg |
6840954 |
T |
|
| Q |
150 |
ggtttaatagcgacagtcatcgcaacaatgacatttcaaatgattttaaatccacccggtggcgttatgtcgattaaagatggggaaaatccacccagta |
249 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||| | |||||||| ||| |
|
|
| T |
6840955 |
ggcttaatagcgacagtcatcgcaacaatgacatttcaaatggttttaaatccgcccggtggtgttatgtcgattaaagatggcacagatccacccggta |
6841054 |
T |
|
| Q |
250 |
ccgacgcaagtccacccggtaccaacgcaaatccaccagatgccaaccgttatgacaaaatttgtacttttgtctacgacaaaattctatgtccaggtga |
349 |
Q |
| |
|
|| |||||| ||||||| |||||||||||||||||||||||||| || || |||||||| |||||||||| |||||| | || ||||||||| ||||| |
|
|
| T |
6841055 |
ccaacgcaaatccacccagtaccaacgcaaatccaccagatgccgacgattctgacaaaaattgtacttttatctacggcgaacgtctatgtccgggtga |
6841154 |
T |
|
| Q |
350 |
agctgtcttagctgttagggactctagtggatatcttcagttccttatttcgaacacaatttgttttattgcatcactaagt |
431 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
6841155 |
agctgtcttagccgttggggactcttatggatattttcagttccttatttccaacacaatttgttttgttgcatcactaagt |
6841236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 6811363 - 6811598
Alignment:
| Q |
16 |
atcatggaggttcaacggaaaccgtatcgaataaggaatcaaagaaaggatggagaaaggtattagagaagatacggagttggttgtcctacaaagacag |
115 |
Q |
| |
|
||||||| ||||||| ||||||| | ||||| ||||| |||||||||| |||||||||| |||||| |||| ||||||| |||| |||||||||| |
|
|
| T |
6811363 |
atcatggtggttcaatagaaaccgcagcgaatgaggaaccaaagaaaggttggagaaaggcattagaagggatagagagttgggtgtcatacaaagacaa |
6811462 |
T |
|
| Q |
116 |
ggac---aaatggttggacgatatgagagggaacttgggtttaatagcgacagtcatcgcaacaatgacatttcaaatgattttaaatccacccggtggc |
212 |
Q |
| |
|
||| ||||||| ||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
6811463 |
ggaggataaatggtgggatgatatgagagggaactttggtttaatagcaacagtcatcgcaacaatgacatttcaaatggttttaaatccacctggtggc |
6811562 |
T |
|
| Q |
213 |
gttatgtcgattaaagatggggaaaatccacccagt |
248 |
Q |
| |
|
||| |||||| ||||||| | ||||||||||||| |
|
|
| T |
6811563 |
attaggtcgatgaaagatgacgcaaatccacccagt |
6811598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 429
Target Start/End: Original strand, 6811718 - 6811758
Alignment:
| Q |
389 |
gttccttatttcgaacacaatttgttttattgcatcactaa |
429 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
6811718 |
gttccttatttccaacacaatttgttttattggatcactaa |
6811758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 6632481 - 6632531
Alignment:
| Q |
166 |
tcatcgcaacaatgacatttcaaatgattttaaatccacccggtggcgtta |
216 |
Q |
| |
|
|||| |||||||| |||||||||||| |||||||||||| |||||||||| |
|
|
| T |
6632481 |
tcatagcaacaataacatttcaaatgggtttaaatccaccgggtggcgtta |
6632531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 431
Target Start/End: Complemental strand, 6849966 - 6849924
Alignment:
| Q |
389 |
gttccttatttcgaacacaatttgttttattgcatcactaagt |
431 |
Q |
| |
|
||||||||| || ||||||||||||||| |||||||||||||| |
|
|
| T |
6849966 |
gttccttatatcaaacacaatttgttttgttgcatcactaagt |
6849924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University