View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8662_low_1 (Length: 1056)

Name: NF8662_low_1
Description: NF8662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8662_low_1
NF8662_low_1
[»] chr7 (7 HSPs)
chr7 (302-777)||(47937829-47938313)
chr7 (873-1040)||(47920341-47920524)
chr7 (779-841)||(47920525-47920587)
chr7 (21-94)||(35150003-35150076)
chr7 (12-83)||(3813185-3813256)
chr7 (203-247)||(30219216-30219260)
chr7 (201-242)||(43540154-43540195)
[»] chr4 (8 HSPs)
chr4 (785-1040)||(29916506-29916777)
chr4 (22-94)||(5186905-5186977)
chr4 (12-83)||(26959150-26959221)
chr4 (32-94)||(48165272-48165334)
chr4 (203-247)||(49976760-49976804)
chr4 (209-247)||(24288158-24288196)
chr4 (30-83)||(10735368-10735421)
chr4 (30-83)||(10949137-10949190)
[»] chr6 (8 HSPs)
chr6 (12-94)||(6101571-6101653)
chr6 (30-92)||(17579760-17579822)
chr6 (12-75)||(21772614-21772677)
chr6 (204-247)||(25343802-25343845)
chr6 (30-83)||(8652825-8652878)
chr6 (203-247)||(8662723-8662767)
chr6 (30-92)||(32031479-32031541)
chr6 (203-247)||(21196963-21197007)
[»] chr5 (9 HSPs)
chr5 (21-94)||(19061725-19061798)
chr5 (23-94)||(12688183-12688254)
chr5 (12-94)||(28527387-28527469)
chr5 (23-94)||(32096217-32096288)
chr5 (12-68)||(41293177-41293233)
chr5 (203-247)||(28531424-28531468)
chr5 (204-241)||(32096903-32096940)
chr5 (200-242)||(19066046-19066088)
chr5 (203-247)||(12692223-12692267)
[»] scaffold0208 (3 HSPs)
scaffold0208 (12-94)||(29201-29283)
scaffold0208 (23-94)||(10478-10549)
scaffold0208 (209-247)||(6696-6734)
[»] chr3 (11 HSPs)
chr3 (12-94)||(11841748-11841830)
chr3 (12-94)||(49155755-49155837)
chr3 (23-94)||(10762661-10762732)
chr3 (23-94)||(42193236-42193307)
chr3 (203-247)||(49151785-49151829)
chr3 (30-83)||(10240230-10240283)
chr3 (203-247)||(42197104-42197148)
chr3 (209-247)||(10244282-10244320)
chr3 (203-241)||(38455494-38455532)
chr3 (30-83)||(38451084-38451137)
chr3 (214-247)||(11846016-11846049)
[»] chr1 (5 HSPs)
chr1 (12-94)||(38145877-38145959)
chr1 (23-94)||(25383551-25383622)
chr1 (12-83)||(31056121-31056192)
chr1 (200-247)||(31051722-31051769)
chr1 (209-247)||(25387452-25387490)
[»] chr8 (7 HSPs)
chr8 (12-94)||(5544189-5544271)
chr8 (23-65)||(10704194-10704236)
chr8 (203-247)||(32891062-32891106)
chr8 (32-92)||(39729250-39729310)
chr8 (204-247)||(31373510-31373553)
chr8 (30-92)||(14414059-14414121)
chr8 (36-79)||(30413332-30413375)
[»] chr2 (7 HSPs)
chr2 (23-94)||(13460113-13460184)
chr2 (203-247)||(13456273-13456317)
chr2 (12-92)||(23341658-23341738)
chr2 (207-247)||(31002551-31002591)
chr2 (203-247)||(35090592-35090636)
chr2 (105-141)||(35439972-35440008)
chr2 (30-83)||(35086689-35086742)
[»] scaffold0012 (1 HSPs)
scaffold0012 (203-239)||(172832-172868)
[»] scaffold0363 (1 HSPs)
scaffold0363 (30-92)||(4590-4652)


Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 302 - 777
Target Start/End: Complemental strand, 47938313 - 47937829
Alignment:
302 aagccatcaattttgaaagttggtttaccaaatgtttgaatttttnnnnnnnttagggactttggggtttcttatatgttgaaattagtgtttggatggg 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
47938313 aagccatcaattttgaaagttggtttaccaaatgtttgaatttttaaaaaaattagggactttggggtttcttatatgttgaaattagtgtttggatggg 47938214  T
402 taattttctgtctagtatgaatgaaagataaacccaacattactcactaaaataaa------------cccaaatgacttttttgacgatggagggtttt 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||    
47938213 taattttctgtctagtatgaatgaaagataaacccaacattactcactaaaataaaagttgagctaaacccaaatgacttttttgacgatggagggtttt 47938114  T
490 tgttggaactgagtcagctaattgaagtaatggtctgatcatttaagagttgaccacgatgaggtgtttggtaatcaagattagccattagttcattttt 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47938113 tgttggaactgagtcagctaattgaagtaatggtctgatcatttaagagttgaccacgatgaggtgtttggtaatcaagattagccattagttcattttt 47938014  T
590 agatacggtaaaatttctcataactaaagtgtttattttttatgat---taatttctatagatgaaatgctcaaccactcagatgtttaggagtgacttt 686  Q
    |||||||||||||||||||||||||||||||||||||||||||  |   | |||||||| ||||||||||||||||||||||||||||||||||||||||    
47938013 agatacggtaaaatttctcataactaaagtgtttattttttattttttatgatttctatcgatgaaatgctcaaccactcagatgtttaggagtgacttt 47937914  T
687 atctctaatttgattgttaggnnnnnnnnacaaggtaaaattacatcctcgaagtcgaagagtgatgctacattaaattctgaacattatc 777  Q
    |||||||||||||||||||||        |||||||||||||||||||      || ||||||||||||||||||||||||||||| ||||    
47937913 atctctaatttgattgttaggttttttttacaaggtaaaattacatcc------tccaagagtgatgctacattaaattctgaacagtatc 47937829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 873 - 1040
Target Start/End: Complemental strand, 47920524 - 47920341
Alignment:
873 ggcttgtggattgatacctacccagaggagtgatataatgattgctattagacccgaccatacaaaaacaatg--------------------tcccatc 952  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||                    |||||||    
47920524 ggcttgtggattgatacctaaccagaggagtgatataatgattgctattagacccgaccatacaaaaacaatggtgggtgtcctccctcttcttcccatc 47920425  T
953 aaaccttttgcaaaaggatagagatgagccagccaagacccagaaactgaagaaaacaccgcctagtaaacggctccaccgtggtatg 1040  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
47920424 aaaccttttgcaaaaggatagagatgagcca----agacccagaaactgaagaaaacaccgcctagttaacggctccactgtggtatg 47920341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 779 - 841
Target Start/End: Complemental strand, 47920587 - 47920525
Alignment:
779 aaagagaaactacaaaggaaaattgtaataatctgacaaaaagaatgagctaccatcatggga 841  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47920587 aaagagaaactacaaaggaaaattgtaataatctgacaaaaagaatgagctaccatcatggga 47920525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 35150076 - 35150003
Alignment:
21 tcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaattg 94  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||    
35150076 tcaatatagtgtttcttaatgatgacattaatgatacaatatggtgcaactgaataaaacttttgtgtcaattg 35150003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 3813256 - 3813185
Alignment:
12 agatggacatcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaacttt 83  Q
    |||||||  ||||||||||||||||||||| ||||||||||||| |||||||||||||| |||| |||||||    
3813256 agatggatttcaatatagtgtttcttaatgatgacattaatgatgcaatatggtgcaactgaatcaaacttt 3813185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 30219216 - 30219260
Alignment:
203 aatcccaataaatcaaacatgaagaccgctctgataccacatgtt 247  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||    
30219216 aatcccaataaatcaaacatgaataccgctctgataccacgtgtt 30219260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 43540195 - 43540154
Alignment:
201 aaaatcccaataaatcaaacatgaagaccgctctgataccac 242  Q
    |||||| ||||| || ||||||||||||||||||||||||||    
43540195 aaaatctcaatagatgaaacatgaagaccgctctgataccac 43540154  T

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Target: chr4 (Bit Score: 154; Significance: 4e-81; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 785 - 1040
Target Start/End: Original strand, 29916506 - 29916777
Alignment:
785 aaactacaaaggaaaattgtaataatctgacaaaaagaatgagctaccatcatgggaacttgaatgaaccgcctatttggtctgtaccggcttgtggatt 884  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
29916506 aaactccaaaggaaaattgtaataatctgacaaaaagaatgagctatcatcatgggaactggaatgaaccgcctatttggtctgtaccggctggtggatt 29916605  T
885 gatacctacccagaggagtgatataatgattgctattagacccgaccatacaaaaacaatg--------------------tcccatcaaaccttttgca 964  Q
    |||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||                    |||||||||||||||||||    
29916606 gatagccacccagaggagtgatataatgattgctatcagacccgaccatacaaaaacaatggtgggtgtcctccctcttcttcccatcaaaccttttgca 29916705  T
965 aaaggatagagatgagccagccaagacccagaaactgaagaaaacaccgcctagtaaacggctccaccgtggtatg 1040  Q
    ||||||||||||||    |||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||    
29916706 aaaggatagagatg----agccaagacccaaaagctgaagaaaacaccgcctagtaaacggctccactgtggtatg 29916777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 5186905 - 5186977
Alignment:
22 caatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaattg 94  Q
    ||||| ||||||||||||||   |||||||||||||||||||||||||| ||| |||||||||||||||||||    
5186905 caatacagtgtttcttaatgacaacattaatgatacaatatggtgcaactgaagaaaactttcgtgtcaattg 5186977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 26959221 - 26959150
Alignment:
12 agatggacatcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaacttt 83  Q
    |||||||  ||||||||||||||||||||| ||||||||||||| |||||||||||||| |||| |||||||    
26959221 agatggatttcaatatagtgtttcttaatgatgacattaatgatgcaatatggtgcaactgaatcaaacttt 26959150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 48165272 - 48165334
Alignment:
32 tttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaattg 94  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| |||| |||| |||||    
48165272 tttcttaatggtgacattaatgatacaatatggtgcaactaaataaagcttttgtgttaattg 48165334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 49976804 - 49976760
Alignment:
203 aatcccaataaatcaaacatgaagaccgctctgataccacatgtt 247  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||    
49976804 aatcccaataaatcaaacatgaagaccactctgataccacttgtt 49976760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 24288196 - 24288158
Alignment:
209 aataaatcaaacatgaagaccgctctgataccacatgtt 247  Q
    |||||||||||||||||||||||||||||||||| ||||    
24288196 aataaatcaaacatgaagaccgctctgataccacttgtt 24288158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 10735421 - 10735368
Alignment:
30 tgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaacttt 83  Q
    |||||||| ||| ||||||||||||| |||||||||||||| |||| |||||||    
10735421 tgtttcttcatgatgacattaatgatgcaatatggtgcaactgaatcaaacttt 10735368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 10949190 - 10949137
Alignment:
30 tgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaacttt 83  Q
    |||||||| ||| ||||||||||||| |||||||||||||| |||| |||||||    
10949190 tgtttcttcatgatgacattaatgatgcaatatggtgcaactgaatcaaacttt 10949137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 8e-27; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 6101571 - 6101653
Alignment:
12 agatggacatcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaattg 94  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||    
6101571 agatggatttcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcagctgaataaaacttttgtgtcaattg 6101653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 17579760 - 17579822
Alignment:
30 tgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaat 92  Q
    ||||||| |||||||||||||||||||||||||||||||||  || |||||||| ||||||||    
17579760 tgtttctcaatggtgacattaatgatacaatatggtgcaacttaagaaaacttttgtgtcaat 17579822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 21772677 - 21772614
Alignment:
12 agatggacatcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaat 75  Q
    |||||||  ||||||||||||||||||||| |||| |||||||| |||||||||||||| ||||    
21772677 agatggatttcaatatagtgtttcttaatgatgacgttaatgatgcaatatggtgcaactgaat 21772614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 25343845 - 25343802
Alignment:
204 atcccaataaatcaaacatgaagaccgctctgataccacatgtt 247  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
25343845 atcccaataaatcaaacatgaagaccgctctgataccacttgtt 25343802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 8652878 - 8652825
Alignment:
30 tgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaacttt 83  Q
    |||||||||||| ||||||||||||| |||||||||||||| |||| |||||||    
8652878 tgtttcttaatgatgacattaatgatgcaatatggtgcaactgaatcaaacttt 8652825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 8662723 - 8662767
Alignment:
203 aatcccaataaatcaaacatgaagaccgctctgataccacatgtt 247  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||    
8662723 aatcccaataaatcaaacataaagaccgctctgataccacttgtt 8662767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 32031541 - 32031479
Alignment:
30 tgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaat 92  Q
    ||||||| |||||||||||||||||||||||||||||| ||  || |||||| | ||||||||    
32031541 tgtttctcaatggtgacattaatgatacaatatggtgctacttaagaaaactcttgtgtcaat 32031479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 21196963 - 21197007
Alignment:
203 aatcccaataaatcaaacatgaagaccgctctgataccacatgtt 247  Q
    ||||| |||||||||||||| ||||||||||||||||||| ||||    
21196963 aatcctaataaatcaaacataaagaccgctctgataccacttgtt 21197007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 3e-26; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 19061798 - 19061725
Alignment:
21 tcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaattg 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||    
19061798 tcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaactgaataaagctttcgtttcaattg 19061725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 12688254 - 12688183
Alignment:
23 aatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaattg 94  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||||||||    
12688254 aatatagtgtttcttaatggtgacattaacgatacaatatggtgcatctgaataaaacttttgtgtcaattg 12688183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 28527469 - 28527387
Alignment:
12 agatggacatcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaattg 94  Q
    |||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||| ||||||||||    
28527469 agatggatttcaatatagtgtttcttaatggtgacattaacgatacaatatggtgcatttgaataaaacttttgtgtcaattg 28527387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 32096288 - 32096217
Alignment:
23 aatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaattg 94  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||| | |||||||||||| ||||||||||    
32096288 aatatagtgtttcttaatggtgacattaacgatacaagatggtgcatctgaataaaacttttgtgtcaattg 32096217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 41293177 - 41293233
Alignment:
12 agatggacatcaatatagtgtttcttaatggtgacattaatgatacaatatggtgca 68  Q
    |||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||    
41293177 agatggatttcaatatagtgtttcttaatggtgacattaacgatacaatatggtgca 41293233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 28531424 - 28531468
Alignment:
203 aatcccaataaatcaaacatgaagaccgctctgataccacatgtt 247  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
28531424 aatcccaataaatcaaacatgaagaccgctctgataccacttgtt 28531468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 32096903 - 32096940
Alignment:
204 atcccaataaatcaaacatgaagaccgctctgatacca 241  Q
    ||||||||||||||||||||||||||||||||||||||    
32096903 atcccaataaatcaaacatgaagaccgctctgatacca 32096940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 19066046 - 19066088
Alignment:
200 aaaaatcccaataaatcaaacatgaagaccgctctgataccac 242  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
19066046 aaaaatcccaataaatcaaacgcgaagaccgctctgataccac 19066088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 12692223 - 12692267
Alignment:
203 aatcccaataaatcaaacatgaagaccgctctgataccacatgtt 247  Q
    ||||| |||||||||||||||||||| ||||||||||||| ||||    
12692223 aatcctaataaatcaaacatgaagacggctctgataccacttgtt 12692267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 59; Significance: 2e-24; HSPs: 3)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 29201 - 29283
Alignment:
12 agatggacatcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaattg 94  Q
    |||||||  ||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||||||||    
29201 agatggatttcaatatagtgtttcttaatggtgacattaacgatacaatatggtgcatctgaataaaacttttgtgtcaattg 29283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 10478 - 10549
Alignment:
23 aatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaattg 94  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||||||||    
10478 aatatagtgtttcttaatggtgacattaacgatacaatatggtgcatctgaataaaacttttgtgtcaattg 10549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 6734 - 6696
Alignment:
209 aataaatcaaacatgaagaccgctctgataccacatgtt 247  Q
    |||||||||||||||||||| ||||||||||||| ||||    
6734 aataaatcaaacatgaagacggctctgataccacttgtt 6696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 2e-24; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 11841830 - 11841748
Alignment:
12 agatggacatcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaattg 94  Q
    |||||||  ||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| ||||||||||    
11841830 agatggatttcaatatagtgtttcttaatgatgacattaatgatgcaatatggtgcaactgaataaaacttttgtgtcaattg 11841748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 49155755 - 49155837
Alignment:
12 agatggacatcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaattg 94  Q
    |||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||| ||||||||||    
49155755 agatggatttcaatatagtgtttcttaatggtgacattaacgatacaatatggtgcatttgaataaaacttttgtgtcaattg 49155837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 10762732 - 10762661
Alignment:
23 aatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaattg 94  Q
    ||||||||||||||||||||||||||||| || ||||||||||||| | |||||||||||| ||||||||||    
10762732 aatatagtgtttcttaatggtgacattaacgacacaatatggtgcatctgaataaaacttttgtgtcaattg 10762661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 42193307 - 42193236
Alignment:
23 aatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaattg 94  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||| ||||||||||    
42193307 aatatagtgtttcttaatggtgacattaacgatacaatatggtgcatgtgaataaaacttttgtgtcaattg 42193236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 49151829 - 49151785
Alignment:
203 aatcccaataaatcaaacatgaagaccgctctgataccacatgtt 247  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
49151829 aatcccaataaatcaaacatgaagaccgctctgataccacttgtt 49151785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 10240283 - 10240230
Alignment:
30 tgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaacttt 83  Q
    |||||||||||| ||||||||||||| |||||||||||||| |||| |||||||    
10240283 tgtttcttaatgatgacattaatgatgcaatatggtgcaactgaatcaaacttt 10240230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 42197104 - 42197148
Alignment:
203 aatcccaataaatcaaacatgaagaccgctctgataccacatgtt 247  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||    
42197104 aatcctaataaatcaaacatgaagaccgctctgataccacttgtt 42197148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 10244282 - 10244320
Alignment:
209 aataaatcaaacatgaagaccgctctgataccacatgtt 247  Q
    |||||||||||||||||||||||||||||||||| ||||    
10244282 aataaatcaaacatgaagaccgctctgataccacttgtt 10244320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 38455494 - 38455532
Alignment:
203 aatcccaataaatcaaacatgaagaccgctctgatacca 241  Q
    ||||| |||||||||||||||||||||||||||||||||    
38455494 aatcctaataaatcaaacatgaagaccgctctgatacca 38455532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 38451137 - 38451084
Alignment:
30 tgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaacttt 83  Q
    |||||||||||| |||||| |||||| |||||||||||||| |||| |||||||    
38451137 tgtttcttaatgatgacatcaatgatgcaatatggtgcaactgaatcaaacttt 38451084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 11846016 - 11846049
Alignment:
214 atcaaacatgaagaccgctctgataccacatgtt 247  Q
    ||||||||||||||||||||||||||||| ||||    
11846016 atcaaacatgaagaccgctctgataccacttgtt 11846049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 2e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 38145959 - 38145877
Alignment:
12 agatggacatcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaattg 94  Q
    |||||||  ||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||||||||    
38145959 agatggatttcaatatagtgtttcttaatggtgacattaacgatacaatatggtgcatctgaataaaacttttgtgtcaattg 38145877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 25383622 - 25383551
Alignment:
23 aatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaattg 94  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||| ||||||||||    
25383622 aatatagtgtttcttaatggtgacattaacgatacaatatggtgcatgtgaataaaacttttgtgtcaattg 25383551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 31056121 - 31056192
Alignment:
12 agatggacatcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaacttt 83  Q
    |||||||  ||||||||||||||||||||| ||||||||||||| |||||||||||||| |||| |||||||    
31056121 agatggatttcaatatagtgtttcttaatgatgacattaatgatgcaatatggtgcaactgaatcaaacttt 31056192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 31051769 - 31051722
Alignment:
200 aaaaatcccaataaatcaaacatgaagaccgctctgataccacatgtt 247  Q
    ||||||| ||||| ||||||||||||||||||||||||||||| ||||    
31051769 aaaaatctcaatagatcaaacatgaagaccgctctgataccacttgtt 31051722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 25387452 - 25387490
Alignment:
209 aataaatcaaacatgaagaccgctctgataccacatgtt 247  Q
    |||||||||||||||||||||||||||||||||| ||||    
25387452 aataaatcaaacatgaagaccgctctgataccacttgtt 25387490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 5e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 5544271 - 5544189
Alignment:
12 agatggacatcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaattg 94  Q
    |||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||| ||||||||||    
5544271 agatggatttcaatatagtgtttcttaatggtgacattaacgatacaatatggtgcatatgaataaaacttttgtgtcaattg 5544189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 10704194 - 10704236
Alignment:
23 aatatagtgtttcttaatggtgacattaatgatacaatatggt 65  Q
    |||||||||||||||||||||||||||||||||||||||||||    
10704194 aatatagtgtttcttaatggtgacattaatgatacaatatggt 10704236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 32891106 - 32891062
Alignment:
203 aatcccaataaatcaaacatgaagaccgctctgataccacatgtt 247  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
32891106 aatcccaataaatcaaacatgaagaccgctctgataccacttgtt 32891062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 39729310 - 39729250
Alignment:
32 tttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaat 92  Q
    ||||| |||||||||||||||||||||||||||||||||  || |||||||| ||||||||    
39729310 tttctcaatggtgacattaatgatacaatatggtgcaacttaagaaaacttttgtgtcaat 39729250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 31373510 - 31373553
Alignment:
204 atcccaataaatcaaacatgaagaccgctctgataccacatgtt 247  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||    
31373510 atcccaataaatcaaacatgaagaccgttctgataccacttgtt 31373553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 14414059 - 14414121
Alignment:
30 tgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaat 92  Q
    ||||||| |||||||||||||||||| ||||||||||||||  || |||||| | ||||||||    
14414059 tgtttctcaatggtgacattaatgattcaatatggtgcaacttaagaaaactcttgtgtcaat 14414121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 30413332 - 30413375
Alignment:
36 ttaatggtgacattaatgatacaatatggtgcaacagaataaaa 79  Q
    ||||||| |||||||||||||||||||| |||||| ||||||||    
30413332 ttaatggcgacattaatgatacaatatgatgcaaccgaataaaa 30413375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 3e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 13460113 - 13460184
Alignment:
23 aatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaattg 94  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||| ||||||||||    
13460113 aatatagtgtttcttaatggtgacattaacgatacaatatggtgcatgtgaataaaacttttgtgtcaattg 13460184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 13456317 - 13456273
Alignment:
203 aatcccaataaatcaaacatgaagaccgctctgataccacatgtt 247  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||    
13456317 aatcctaataaatcaaacatgaagaccgctctgataccacttgtt 13456273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 23341658 - 23341738
Alignment:
12 agatggacatcaatatagtgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaat 92  Q
    |||||||  ||||||||||  || |||||||  ||||||||||||||||||||||||||  || |||||||| ||||||||    
23341658 agatggatgtcaatatagtaatttttaatggcaacattaatgatacaatatggtgcaactaaagaaaacttttgtgtcaat 23341738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 31002591 - 31002551
Alignment:
207 ccaataaatcaaacatgaagaccgctctgataccacatgtt 247  Q
    |||||||||||||||||||||||||||||||||||| ||||    
31002591 ccaataaatcaaacatgaagaccgctctgataccacttgtt 31002551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 35090592 - 35090636
Alignment:
203 aatcccaataaatcaaacatgaagaccgctctgataccacatgtt 247  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
35090592 aatctcaataaatcaaacatgaagaccgctctgataccacttgtt 35090636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 35440008 - 35439972
Alignment:
105 gcgcctaaagaactctgatataattattaagttatgt 141  Q
    ||||||||||||||||||||||||||||||| |||||    
35440008 gcgcctaaagaactctgatataattattaagatatgt 35439972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 35086742 - 35086689
Alignment:
30 tgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaacttt 83  Q
    ||||||| |||||||||||||||||||| |||||| |||||   ||||||||||    
35086742 tgtttctcaatggtgacattaatgatactatatggcgcaaccacataaaacttt 35086689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 172832 - 172868
Alignment:
203 aatcccaataaatcaaacatgaagaccgctctgatac 239  Q
    |||||||||||||||||||||||||||||||||||||    
172832 aatcccaataaatcaaacatgaagaccgctctgatac 172868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 4652 - 4590
Alignment:
30 tgtttcttaatggtgacattaatgatacaatatggtgcaacagaataaaactttcgtgtcaat 92  Q
    ||||||| |||||||||||||||||| ||||||||||||||  || |||||| | ||||||||    
4652 tgtttctcaatggtgacattaatgattcaatatggtgcaacttaagaaaactcttgtgtcaat 4590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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