View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8662_low_10 (Length: 360)
Name: NF8662_low_10
Description: NF8662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8662_low_10 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 360
Target Start/End: Complemental strand, 28783646 - 28783302
Alignment:
| Q |
16 |
atatgtaacgaaacttggaatgatactctttgaattactatcagaagctcttggattgcatccaaaccatttaaaagacatgggttgtgctaaggggatt |
115 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28783646 |
atatgtaacgaaacttggaatgacactctttgaattactatcagaagctcttggattgcatccaaaccatttaaaagacatgggttgtgctaaggggatt |
28783547 |
T |
|
| Q |
116 |
ctatcacttagtcattactatcctgcttgtcctgaaccagaattaactatgggaaccacaaaacattctgatagttgttttctcacattgcttcttcaag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28783546 |
ctatcacttagtcattactatcctgcttgtcctgaaccagaattaactatgggaaccacaaaacattctgatagttgttttctcacattgcttcttcaag |
28783447 |
T |
|
| Q |
216 |
atgatcatattggtggcctccaagttcttcaccagaacaagtggattgatatacctccaatacatgatgctcttgttgttaatgttggtgatcttctaca |
315 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28783446 |
atgatcatattggtggcctccaagtttttcaccagaacaagtggattgatatacctccaatacctgatgctcttgttgttaatgttggtgatcttctaca |
28783347 |
T |
|
| Q |
316 |
ggcaagttaatcttttttactattctacttatgtagtatatttta |
360 |
Q |
| |
|
|||||||| |||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
28783346 |
ggcaagttcttcttcttttctattctacttctgtagtatatttta |
28783302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 28742657 - 28742355
Alignment:
| Q |
18 |
atgtaacgaaacttggaatgatactctttgaattactatcagaagctcttggattgcatccaaaccatttaaaagacatgggttgtgctaaggggattct |
117 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | |||| || |||||| | | |
|
|
| T |
28742657 |
atgtaatgaaacttggaattgtactctttgaattactatcagaagcacttggattgcatccaaaccatttaaaagacttagattgttctgaggggaattt |
28742558 |
T |
|
| Q |
118 |
atcacttagtcattactatcctgcttgtcctgaaccagaattaactatgggaaccacaaaacattctgatagttgttttctcacattgcttcttcaagat |
217 |
Q |
| |
|
| |||| | ||||||||||||||||||||||||||| | ||||| ||||||||| | ||||||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
28742557 |
gttactttgccattactatcctgcttgtcctgaaccacatttaacgatgggaaccgccaaacattctgatagtagtttcctcacagtgcttcttcaa--- |
28742461 |
T |
|
| Q |
218 |
gatcatattggtggcctccaagttcttcaccagaacaagtggattgatatacctccaatacatgatgctcttgttgttaatgttggtgatcttctacagg |
317 |
Q |
| |
|
|| |||||||||||||| |||||||||||| || |||||||||||| |||| ||||||| ||| ||||||||| ||||| |||||||| |||| |||| |
|
|
| T |
28742460 |
gaccatattggtggccttcaagttcttcacaagggaaagtggattgatgtaccaccaatacctgaggctcttgttattaatattggtgatgttctgcagg |
28742361 |
T |
|
| Q |
318 |
caagtt |
323 |
Q |
| |
|
|||||| |
|
|
| T |
28742360 |
caagtt |
28742355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 25 - 323
Target Start/End: Complemental strand, 28735568 - 28735273
Alignment:
| Q |
25 |
gaaacttggaatgatactctttgaattactatcagaagctcttggattgcatccaaaccatttaaaagacatgggttgtgctaaggggattctatcactt |
124 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | | |||| | | |||| ||| |||| |
|
|
| T |
28735568 |
gaaacttggaacaatactctttgaattactatcagaagctcttggattgcattcaaaccatttaaaggacttagattgttgtgaagggaacatattactt |
28735469 |
T |
|
| Q |
125 |
agtcattactatcctgcttgtcctgaaccagaattaactatgggaaccacaaaacattctgatagttgttttctcacattgcttcttcaagatgatcata |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| || ||||||||||| ||||||| ||| || |||| |
|
|
| T |
28735468 |
ggtcattactatcctgcttgtcctgaaccagatttaacaatgggaaccaccaaacattctgatggtagttttctcacagtgcttctccaa---gaccata |
28735372 |
T |
|
| Q |
225 |
ttggtggcctccaagttcttcaccagaacaagtggattgatatacctccaatacatgatgctcttgttgttaatgttggtgatcttctacaggcaagtt |
323 |
Q |
| |
|
||||||| || ||||||||| |||| | |||||||| ||| |||| || ||| || ||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
28735371 |
ttggtggtcttcaagttctttaccaagaaaagtggatcgatgtaccaccggtacccgaggctcttgttgttaatattggtgatcttctgcaggcaagtt |
28735273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 25 - 323
Target Start/End: Complemental strand, 28700567 - 28700269
Alignment:
| Q |
25 |
gaaacttggaatgatactctttgaattactatcagaagctcttggattgcatccaaaccatttaaaagacatgggttgtgctaaggggattctatcactt |
124 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| |||| | |||||| | | | || |
|
|
| T |
28700567 |
gaaacttggaagagtactctttgaattactatcagaagctcttggattgcatccaaaccatttgaaggacttggattgttgtgaggggaatatgataatt |
28700468 |
T |
|
| Q |
125 |
agtcattactatcctgcttgtcctgaaccagaattaactatgggaaccacaaaacattctgatagttgttttctcacattgcttcttcaagatgatcata |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| | ||||||||||| ||||||| ||||| | || |
|
|
| T |
28700467 |
ggtcattactatcctgcttgtcctgaaccagatttaacaatgggaaccaccaaacattctgatgttagttttctcacagtgcttctccaagaccgtatta |
28700368 |
T |
|
| Q |
225 |
ttggtggcctccaagttcttcaccagaacaagtggattgatatacctccaatacatgatgctcttgttgttaatgttggtgatcttctacaggcaagtt |
323 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||| ||| |||| || ||| | ||||||||||||||| | ||||||||||| |||||||||| |
|
|
| T |
28700367 |
ttggtggccttcaagttcttcaccaagacaagtggatcgatgtaccaccggtacccggggctcttgttgttaatatcggtgatcttctgcaggcaagtt |
28700269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 39 - 244
Target Start/End: Original strand, 2050683 - 2050885
Alignment:
| Q |
39 |
tactctttgaattactatcagaagctcttggattgcatccaaaccatttaaaagacatgggttgtgctaaggggattctatcacttagtcattactatcc |
138 |
Q |
| |
|
|||| |||||||| | ||||||||| | ||| || ||||||||||| ||||||| |||||||||||| | ||| | | | ||| | ||||| ||||| |
|
|
| T |
2050683 |
tactatttgaattgatgtcagaagctttaggactgaatccaaaccatctaaaagatatgggttgtgctgaagggctaattgctctttgccattattatcc |
2050782 |
T |
|
| Q |
139 |
tgcttgtcctgaaccagaattaactatgggaaccacaaaacattctgatagttgttttctcacattgcttcttcaagatgatcatattggtggcctccaa |
238 |
Q |
| |
|
| ||||||||||||||||||| ||| | ||||| ||||| |||||||||| | ||| |||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
2050783 |
tccttgtcctgaaccagaattgactgtcggaacaacaaagcattctgataatgatttcctcacagtgcttcttcaa---gaccatattggtggcctccaa |
2050879 |
T |
|
| Q |
239 |
gttctt |
244 |
Q |
| |
|
|||||| |
|
|
| T |
2050880 |
gttctt |
2050885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 75 - 244
Target Start/End: Original strand, 2055128 - 2055294
Alignment:
| Q |
75 |
atccaaaccatttaaaagacatgggttgtgctaaggggattctatcacttagtcattactatcctgcttgtcctgaaccagaattaactatgggaaccac |
174 |
Q |
| |
|
||||||||||||| ||||| |||| ||||||| | ||| | | | ||| | |||||||| ||| ||||||||||||||||||| ||| | ||||| || |
|
|
| T |
2055128 |
atccaaaccatttgaaagatatggattgtgctgaagggctgattgctctttgccattactaccctccttgtcctgaaccagaattgactgtcggaacaac |
2055227 |
T |
|
| Q |
175 |
aaaacattctgatagttgttttctcacattgcttcttcaagatgatcatattggtggcctccaagttctt |
244 |
Q |
| |
|
||| |||||||||| | ||| |||||| ||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
2055228 |
aaagcattctgataatgatttcctcacagtgcttcttcaa---gaccatattggtggcctccaagttctt |
2055294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 75 - 323
Target Start/End: Original strand, 2029428 - 2029673
Alignment:
| Q |
75 |
atccaaaccatttaaaagacatgggttgtgctaaggggattctatcacttagtcattactatcctgcttgtcctgaaccagaattaactatgggaaccac |
174 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| | ||| | | | ||| | ||||| |||||| ||||||||||||||||||| ||| ||||||| || |
|
|
| T |
2029428 |
atccaaaccatctaaaagatatgggttgtgccgaagggctaattgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaac |
2029527 |
T |
|
| Q |
175 |
aaaacattctgatagttgttttctcacattgcttcttcaagatgatcatattggtggcctccaagttcttcaccagaacaagtggattgatatacctcca |
274 |
Q |
| |
|
||| |||| ||| | | ||| |||||| ||||||| ||| || |||||||||||||||||||||||| | | | || |||||||||||| | || |
|
|
| T |
2029528 |
aaagcattgtgacaatgatttcctcacagtgcttctccaa---gaccatattggtggcctccaagttctttatgaagataaatggattgatataacacct |
2029624 |
T |
|
| Q |
275 |
atacatgatgctcttgttgttaatgttggtgatcttctacaggcaagtt |
323 |
Q |
| |
|
||| || ||||| || |||||||||||||||||| | |||||||||| |
|
|
| T |
2029625 |
gtacctggagctctcgtagttaatgttggtgatcttttgcaggcaagtt |
2029673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 39 - 323
Target Start/End: Original strand, 2057916 - 2058197
Alignment:
| Q |
39 |
tactctttgaattactatcagaagctcttggattgcatccaaaccatttaaaagacatgggttgtgctaaggggattctatcacttagtcattactatcc |
138 |
Q |
| |
|
|||| |||||||| | ||||||||| | || ||| ||||||||||| ||||||| |||||||||||| | ||| | | | ||| ||||||| ||||| |
|
|
| T |
2057916 |
tactgtttgaattgttgtcagaagctttaggtttgaatccaaaccatctaaaagatatgggttgtgctgaagggctaattgctctttgtcattattatcc |
2058015 |
T |
|
| Q |
139 |
tgcttgtcctgaaccagaattaactatgggaaccacaaaacattctgatagttgttttctcacattgcttcttcaagatgatcatattggtggcctccaa |
238 |
Q |
| |
|
| ||| ||| ||||||||||| ||| ||||||| || || |||||||||| | ||| || ||| ||||||| ||| || ||||||||||| |||||| |
|
|
| T |
2058016 |
ttcttatcccgaaccagaattgactgtgggaacaaccaagcattctgataatgatttcctgacaatgcttctacaa---gaccatattggtggtctccaa |
2058112 |
T |
|
| Q |
239 |
gttcttcaccagaacaagtggattgatatacctccaatacatgatgctcttgttgttaatgttggtgatcttctacaggcaagtt |
323 |
Q |
| |
|
|||||| | | | || |||||||||||| | || ||| || ||||| | |||||||||||||||||||| |||||||||| |
|
|
| T |
2058113 |
gttctttatgaagataaatggattgatataacacctgtacctggagctctcctagttaatgttggtgatcttcttcaggcaagtt |
2058197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 267
Target Start/End: Original strand, 10768503 - 10768641
Alignment:
| Q |
126 |
gtcattactatcctgcttgtcctgaaccagaattaactatgggaaccacaaaacattctgatagttgttttctcacattgcttcttcaagatgatcatat |
225 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| ||| ||||||| || || |||||||||| | ||| ||||| ||||||| ||| || ||||| |
|
|
| T |
10768503 |
gtcattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagcattctgataatgatttcctcactgtgcttctccaa---gaccatat |
10768599 |
T |
|
| Q |
226 |
tggtggcctccaagttcttcaccagaacaagtggattgatat |
267 |
Q |
| |
|
||||||||||||||||||| | ||| | || ||||||||||| |
|
|
| T |
10768600 |
tggtggcctccaagttctttatcaggataaatggattgatat |
10768641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 244
Target Start/End: Complemental strand, 1948674 - 1948561
Alignment:
| Q |
128 |
cattactatcctgcttgtcctgaaccagaattaactatgggaaccacaaaacattctgatagttgttttctcacattgcttcttcaagatgatcatattg |
227 |
Q |
| |
|
||||| |||||| ||||||||||||||||| | ||||||||||| || || ||||| || | ||||||||||| ||||||| ||| || ||||||| |
|
|
| T |
1948674 |
cattattatccttcttgtcctgaaccagaactgactatgggaacaactaagcattcagaccatagttttctcacagtgcttctacaa---gaccatattg |
1948578 |
T |
|
| Q |
228 |
gtggcctccaagttctt |
244 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
1948577 |
gtggtctccaagttctt |
1948561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 323
Target Start/End: Original strand, 2033987 - 2034232
Alignment:
| Q |
75 |
atccaaaccatttaaaagacatgggttgtgctaaggggattctatcacttagtcattactatcctgcttgtcctgaaccagaattaactatgggaaccac |
174 |
Q |
| |
|
||||||||||||| ||||| |||| ||||||| | ||| | | | ||| | |||||||| ||| ||||||||||||||||||| ||| | ||||| || |
|
|
| T |
2033987 |
atccaaaccatttgaaagatatggattgtgctgaagggctgattgctctttgccattactaccctccttgtcctgaaccagaattgactgtaggaacaac |
2034086 |
T |
|
| Q |
175 |
aaaacattctgatagttgttttctcacattgcttcttcaagatgatcatattggtggcctccaagttcttcaccagaacaagtggattgatatacctcca |
274 |
Q |
| |
|
||| |||||||||| | ||| |||||| ||||||| ||| || ||| ||||||| || |||||||| | | |||| |||||||||||| | || |
|
|
| T |
2034087 |
aaagcattctgataatgatttcctcacagtgcttctacaa---gaccatgttggtggtcttcaagttctgtatgacgacaaatggattgatataacacct |
2034183 |
T |
|
| Q |
275 |
atacatgatgctcttgttgttaatgttggtgatcttctacaggcaagtt |
323 |
Q |
| |
|
||| || ||||| ||||| |||| ||||||||||| |||||||||| |
|
|
| T |
2034184 |
gtacctggagctctcattgttgatgtcggtgatcttctgcaggcaagtt |
2034232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 307
Target Start/End: Original strand, 16439170 - 16439346
Alignment:
| Q |
128 |
cattactatcctgcttgtcctgaaccagaattaactatgggaaccacaaaacattctgatagttgttttc-tcacattgcttcttcaagatgatcatatt |
226 |
Q |
| |
|
|||||||||| || || |||||||| || |||||| ||||||||| ||||||| | ||| |||| |||| |||| ||||||| |||||| |||| |
|
|
| T |
16439170 |
cattactatctggcctgccctgaacccgagttaactttgggaaccataaaacatgcagat-gttgatttcatcacggtgcttctacaagat---cataca |
16439265 |
T |
|
| Q |
227 |
ggtggcctccaagttcttcaccagaacaagtggattgatatacctccaatacatgatgctcttgttgttaatgttggtgat |
307 |
Q |
| |
|
||||| |||||||||||||| | | | |||||||||| ||||||| ||||||| ||||||||||||||| | |||||| |
|
|
| T |
16439266 |
ggtggtctccaagttcttcataaagatatgtggattgatgtacctcctctacatgaggctcttgttgttaatatcggtgat |
16439346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 181
Target Start/End: Complemental strand, 16414773 - 16414631
Alignment:
| Q |
39 |
tactctttgaattactatcagaagctcttggattgcatccaaaccatttaaaagacatgggttgtgctaaggggattctat-cacttagtcattactatc |
137 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| || || ||| | |||||| |||||| ||||||||| | ||| || ||| | || | |||||||||| |
|
|
| T |
16414773 |
tactgtttgagttactatcagaagctcttggtctgaattcaacctatttaacagacattggttgtgctga-gggcttttatgcttttggccattactatc |
16414675 |
T |
|
| Q |
138 |
ctgcttgtcctgaaccagaattaactatgggaaccacaaaacat |
181 |
Q |
| |
|
| | ||||||||||| ||||||||| | |||||| |||||||| |
|
|
| T |
16414674 |
caccctgtcctgaaccggaattaactttaggaacctcaaaacat |
16414631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 33761994 - 33761949
Alignment:
| Q |
126 |
gtcattactatcctgcttgtcctgaaccagaattaactatgggaac |
171 |
Q |
| |
|
|||| ||||||||||| || |||||||| ||||||||||||||||| |
|
|
| T |
33761994 |
gtcactactatcctgcatgccctgaacccgaattaactatgggaac |
33761949 |
T |
|
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 19890978 - 19891020
Alignment:
| Q |
126 |
gtcattactatcctgcttgtcctgaaccagaattaactatggg |
168 |
Q |
| |
|
||||||||||||| || ||||||||||| |||||||||||||| |
|
|
| T |
19890978 |
gtcattactatccagcatgtcctgaacctgaattaactatggg |
19891020 |
T |
|
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