View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8662_low_11 (Length: 315)
Name: NF8662_low_11
Description: NF8662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8662_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 34943225 - 34943497
Alignment:
| Q |
1 |
ccttcttctttagtacatcaattaacaaccaaccatggcttccttattatatagaacttttggctatcaaatctcttcatttgtaaaccgttggtttata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34943225 |
ccttcttctttagtacatcaattaacaaccaaccatggcttccttattatatagaacttttggctatcaaatctcttcatttgtaaaccgttggtttata |
34943324 |
T |
|
| Q |
101 |
caaccatctcatcatcataatcatagtcataataataatcacaaaaccaataagaggttcaacatgccgaagggtcgaccgatttccttacaggtttgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34943325 |
caaccatctcatcatcataatcatagtcataataataatcacaaaaccaataagaggttcaacatgccgaagggtcgaccgatttccttacaggtttgat |
34943424 |
T |
|
| Q |
201 |
taatgcttagttaccatatatatggcctgttcttattaattagtgtttatgtgtgtgtttacatatgtatata |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34943425 |
taatgcttagttaccatatatatggcctgttcttattaattagtgtttatgtgtgtgtttacatatatatata |
34943497 |
T |
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