View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8662_low_12 (Length: 311)
Name: NF8662_low_12
Description: NF8662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8662_low_12 |
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| [»] scaffold0114 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 14720963 - 14721240
Alignment:
| Q |
18 |
acattaaagatggcatctgcatcacttcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagc |
117 |
Q |
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|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14720963 |
acattaaagatggcatctacatcacttcaaaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagttttcaaggtagacatctcaaaagc |
14721062 |
T |
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| Q |
118 |
ttttgatgcattggagtgaaaatttcttcttagtgtattaagtaagtttggttttaatgatactttatgttcttggattcatacaatcttaaaatttgct |
217 |
Q |
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|||| || |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14721063 |
ttttaatacattggagtggaaattgcttcttagtgtattaag----tttggttttaatgatactttatgttcttggattcatacaatcttaaaatttgct |
14721158 |
T |
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| Q |
218 |
actctttcaatctatgtcaatggcaagcagaatggttattttcattgtaagagaaaattcaggcaaggtgaccccctgtctc |
299 |
Q |
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| T |
14721159 |
actctttcaatctatgtcaatggcaaccagaatgattattttcattgtaagagaaaagtcaggcagggtgaccccctgtctc |
14721240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 168
Target Start/End: Complemental strand, 28186842 - 28186697
Alignment:
| Q |
23 |
aaagatggcatctgcatcacttcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagcttttg |
122 |
Q |
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|||||||| || || ||||| ||||||||||| ||||| || ||||| ||||| |||||||| |||||| |||||||||| ||||||||||| ||||||| |
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| T |
28186842 |
aaagatggtatttgtatcacatcagaagcaataaatcatctccatcaaaaagcatatgcagggaatttacctttcaaggttgacatctcaaaggcttttg |
28186743 |
T |
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| Q |
123 |
atgcattggagtgaaaatttcttcttagtgtattaagtaagtttgg |
168 |
Q |
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| T |
28186742 |
acacattggagtggaaatttcttcttactgtgttaagaaagtttgg |
28186697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 19216460 - 19216279
Alignment:
| Q |
23 |
aaagatggcatctgcatcacttcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagcttttg |
122 |
Q |
| |
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|||||||| |||||||| || ||||||| ||| || ||||||||||| ||| ||| |||||| ||| ||||||| || || || || || |||||||||| |
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| T |
19216460 |
aaagatggaatctgcattacctcagaagtaattaaccaccttcatcacaaatcttttgcaggtaatctagcttttaaagtggatatttccaaagcttttg |
19216361 |
T |
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| Q |
123 |
atgcattggagtgaaaatttcttcttagtgtattaagtaagtttggttttaatgatactttatgttcttggattcatacaat |
204 |
Q |
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| T |
19216360 |
acacattggaatggaaatttttgctcagagttctcagtaagtttggtttctgtgagaaattgtgctcttggattcatacaat |
19216279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 12115073 - 12115128
Alignment:
| Q |
215 |
gctactctttcaatctatgtcaatggcaagcagaatggttattttcattgtaagag |
270 |
Q |
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| T |
12115073 |
gctactctttcaatatctgtaaatggtaagcaaaatggttattttcattgtaagag |
12115128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 18923626 - 18923541
Alignment:
| Q |
39 |
tcacttcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagcttttgat |
124 |
Q |
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| T |
18923626 |
tcacttctgaagctattaaccatcttcatcataaagcttttgcaggtaacttggctttcaaggtagatatttctaaagcttttgat |
18923541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 7573383 - 7573668
Alignment:
| Q |
20 |
attaaagatggcatctgcatcacttcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagctt |
119 |
Q |
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||||||||||| ||||| ||||| ||||||||||| ||||| | ||||| ||||| |||||||| ||||| ||||||||||| ||||||||||| | || |
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| T |
7573383 |
attaaagatggtatctgtatcacatcagaagcaataaatcatcaccatcaaaaagcatatgcagggaatttggctttcaaggttgacatctcaaaggttt |
7573482 |
T |
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| Q |
120 |
ttgatgcattggagtgaaaatttcttcttagtgtattaagtaagtttggttttaatgatactttatgttcttggattcatacaatcttaaaatttgctac |
219 |
Q |
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| T |
7573483 |
ttgacacgctcgagtggacatttcttctttg-gtgctaagaaagtttggattcaatgatagattttgctcctggatcaacacaattctaaactctgctac |
7573581 |
T |
|
| Q |
220 |
tctttcaatctatgtcaatggcaagcagaatggttattttcattgtaagagaaaattcaggcaaggtgaccccctgtctctgcttct |
306 |
Q |
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| T |
7573582 |
tctttcaatctctgtcaatggcaaacaaaatggatacttccattgcaagagaggagtcaggcagggtgaccccttgtcccttcttct |
7573668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 50 - 267
Target Start/End: Original strand, 22562641 - 22562858
Alignment:
| Q |
50 |
gcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagcttttgatgcattggagtgaaaatttcttctta |
149 |
Q |
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||||||||||| |||||||||||| |||||| ||||| ||||||| ||||| |||||||| ||||| |||||| | | || || || || || || | |
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| T |
22562641 |
gcaatcaatcatcttcatcagaaatcttatgtgggaaacctagcttttaaggtggacatctccaaagcctttgatactcttgaatggaagttcctgctaa |
22562740 |
T |
|
| Q |
150 |
gtgtattaagtaagtttggttttaatg-atactttatgttcttggattcatacaatcttaaaatttgctactctttcaatctatgtcaatggcaagcaga |
248 |
Q |
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||| |||||||| |||||||| |||| | | ||| ||||||||||||||||| ||| | || | ||||||||| || |||| ||| ||||||||||||| |
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| T |
22562741 |
ctgttttaagtaaatttggtttcaatgcacaattt-tgttcttggattcataccatcctcaagtctgctactctctctatctctgttaatggcaagcaga |
22562839 |
T |
|
| Q |
249 |
atggttattttcattgtaa |
267 |
Q |
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||||||| ||||||||||| |
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| T |
22562840 |
atggttactttcattgtaa |
22562858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0114 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 23779 - 23700
Alignment:
| Q |
44 |
tcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagcttttga |
123 |
Q |
| |
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|||||||| |||||||| || || | ||||||| |||||| ||| | ||||| |||||||||||||| ||||||||||| |
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| T |
23779 |
tcagaagcgatcaatcatctacacaacaaagcttttgcaggtaatcttgcttttaaggtagacatctccaaagcttttga |
23700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 23682887 - 23683049
Alignment:
| Q |
42 |
cttcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagcttttgatgcattggagtgaaaatt |
141 |
Q |
| |
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|||||||||| |||||||| ||||| | || ||| ||| |||||| |||||||||| ||||| || |||||||||||||| | || || || || || |
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| T |
23682887 |
cttcagaagccatcaatcaacttcacaacaagtcttttgctggaaatctagctttcaaagtagatatttcaaaagcttttgacactttagaatggaagtt |
23682986 |
T |
|
| Q |
142 |
tcttcttagtgtattaagtaagtttggttttaatgatactttatgttcttggattcatacaat |
204 |
Q |
| |
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||||| || || ||||| | |||||||||||||||| || | ||||||||| ||||||| |
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| T |
23682987 |
ccttctcagagtcttaagcagttttggttttaatgataaatttttctcttggattaatacaat |
23683049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 23851924 - 23851762
Alignment:
| Q |
42 |
cttcagaagcaatcaatcaccttcatcagaaagcttatgcaggaaatttagctttcaaggtagacatctcaaaagcttttgatgcattggagtgaaaatt |
141 |
Q |
| |
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|||||||||| |||||||| ||||| | || ||| ||| |||||| |||||||||| ||||| || |||||||||||||| | || || || || || |
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| T |
23851924 |
cttcagaagccatcaatcaacttcacaacaagtcttttgctggaaatctagctttcaaagtagatatttcaaaagcttttgacactttagaatggaagtt |
23851825 |
T |
|
| Q |
142 |
tcttcttagtgtattaagtaagtttggttttaatgatactttatgttcttggattcatacaat |
204 |
Q |
| |
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||||| || || ||||| | |||||||||||||||| || | ||||||||| ||||||| |
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| T |
23851824 |
ccttctcagagtcttaagcagttttggttttaatgataaatttttctcttggattaatacaat |
23851762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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