View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8662_low_16 (Length: 270)
Name: NF8662_low_16
Description: NF8662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8662_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 24543344 - 24543086
Alignment:
| Q |
1 |
ttcccttgccaactttatcagaagagggtccacccaaagaactctgaatcttctgaatcttcctaggttgttccagattctttgaagatggaacagttgt |
100 |
Q |
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| T |
24543344 |
ttcccttgccaactttatcagaagagggtccacccaaagaactctgaatcttctgaatcttcctaggttgttccagattctttgaagatggaacatttgt |
24543245 |
T |
|
| Q |
101 |
gcaagaagataaatctttagtcttaggtttagtagaaccacttctcttcttggtaaccttttcagtttggaacttcactaccaaagacttgttaatgcct |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24543244 |
gcaagaagataaatctttagtcttaggtctagtagaaccacttctcttcttggtaaccttttcagtttggaacttcactaccaaagacttgttaatgcct |
24543145 |
T |
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| Q |
201 |
ttttctttaggaggctttgatactcgaggcttacctacacaccatatagctaagaataa |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24543144 |
ttttctttaggaggctttgatactcgaggcttacctacacaccatatagctaagaataa |
24543086 |
T |
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