View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8662_low_19 (Length: 228)
Name: NF8662_low_19
Description: NF8662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8662_low_19 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 28782830 - 28783057
Alignment:
| Q |
1 |
caatcccttttgtattgtagtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttctgataaaaattcttttataggtccgta |
100 |
Q |
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| T |
28782830 |
caatcccttttgtattgtagtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttctgataaaaattcttttataggtccgta |
28782929 |
T |
|
| Q |
101 |
ttggtttgagaaagagttaagatctgcattgaaaaaacatgcaacagatactctaggacctatgatgtttgccaacactttgtgctccacactcttgaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28782930 |
ttggtttgagaaagagttaagatctgcattgaaaaaacatgcaacagatactctaggacctatgatgtttgccaacactttgtgctccacactcttgaat |
28783029 |
T |
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| Q |
201 |
ttgtcatttgttaccagctgtaactcaa |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
28783030 |
ttgtcatttgttaccagctgtaactcaa |
28783057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 28699494 - 28699598
Alignment:
| Q |
118 |
taagatctgcattgaaaaaacatgcaacagatactctaggacctatgatgtttgccaacactttgtgctccacactcttgaatttgtcatttgttaccag |
217 |
Q |
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| T |
28699494 |
taagacctgccttgaaaaagcatgcaacagatattcttggaccaatgccatttgccagtactctatgttcaacactcttgaatttgtcatttgttatcag |
28699593 |
T |
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| Q |
218 |
ctgta |
222 |
Q |
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||||| |
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| T |
28699594 |
ctgta |
28699598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 28742014 - 28742222
Alignment:
| Q |
5 |
cccttttgtattgtagtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttctgataaaaattcttttataggtccgtattgg |
104 |
Q |
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| T |
28742014 |
cccttttgcattgtagtaggctacaaaatctgtaaaagtggtttctctatatcttggagggttgtcttctgataaaatttcttttataggtccatagagc |
28742113 |
T |
|
| Q |
105 |
tttgagaaagagttaagatctgcattgaaaaaacatgcaacagatactctaggacctatgatgtttgccaacactttgtgctccacactcttgaatttgt |
204 |
Q |
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||| | || || |||| |||||||| |||||||||||||||| ||||| || | ||||| | ||| ||||||| |||||||||||| ||| |
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| T |
28742114 |
ttttcttgtgctctaggacctgccctgaaaaaagatgcaacagatactcttggaccaatagtatttgctagtactctgtgctcaacactcttgaatctgt |
28742213 |
T |
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| Q |
205 |
catttgtta |
213 |
Q |
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||||||||| |
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| T |
28742214 |
catttgtta |
28742222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 28699422 - 28699473
Alignment:
| Q |
46 |
tttctttgtatttgggaggattgtcttctgataaaaattcttttataggtcc |
97 |
Q |
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| T |
28699422 |
tttctttgtatctgggagggttgttttctgataataattctgttataggtcc |
28699473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 28735000 - 28735098
Alignment:
| Q |
124 |
ctgcattgaaaaaacatgcaacagatactctaggacctatgatgtttgccaacactttgtgctccacactcttgaatttgtcatttgttaccagctgta |
222 |
Q |
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|||| |||||||| ||||||||||||| ||| ||||| ||| ||||||| ||| | || || |||||||||||||| |||||||||| ||||||| |
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| T |
28735000 |
ctgccttgaaaaagcatgcaacagatattcttggaccaatgtcatttgccagtactctatgttcaacactcttgaatttatcatttgttataagctgta |
28735098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 213
Target Start/End: Complemental strand, 10769564 - 10769397
Alignment:
| Q |
46 |
tttctttgtatttgggaggattgtcttctgataaaaattcttttataggtccgtattggtttgagaaagagttaagatctgcattgaaaaaacatgcaac |
145 |
Q |
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||||| ||||| |||||||||||||||||||||| | ||| ||||||||||| || | |||||| | || || || | | ||||||||||||||| |
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| T |
10769564 |
tttctctgtatatgggaggattgtcttctgataatagttcctttataggtccatagagctttgaggatgacctatgaccggtgcagaaaaaacatgcaac |
10769465 |
T |
|
| Q |
146 |
agatactctaggacctatgatgtttgccaacactttgtgctccacactcttgaatttgtcatttgtta |
213 |
Q |
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| T |
10769464 |
agatattcttggaccaacattatttgcaagaactctgtgctccacactcttgaatttgtcatttgtta |
10769397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 2034862 - 2034784
Alignment:
| Q |
19 |
agtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttctgataaaaattcttttataggtcc |
97 |
Q |
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|||| |||||||| || |||| ||| ||||| ||||||| |||||||||||||||||||| | ||| ||||||||||| |
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| T |
2034862 |
agtaagctacataatcagaaaccgttgtttctctgtatttaggaggattgtcttctgataatagttcctttataggtcc |
2034784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 2055936 - 2055874
Alignment:
| Q |
17 |
gtagtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttctgataa |
79 |
Q |
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| T |
2055936 |
gtagtaggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataa |
2055874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 2048156 - 2048105
Alignment:
| Q |
46 |
tttctttgtatttgggaggattgtcttctgataaaaattcttttataggtcc |
97 |
Q |
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||||| ||||||| |||||||||||||||||||| | |||||| |||||||| |
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| T |
2048156 |
tttctctgtatttaggaggattgtcttctgataatagttctttcataggtcc |
2048105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 2059111 - 2059078
Alignment:
| Q |
46 |
tttctttgtatttgggaggattgtcttctgataa |
79 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
2059111 |
tttctctgtatttgggaggattgtcttctgataa |
2059078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 2052050 - 2052018
Alignment:
| Q |
46 |
tttctttgtatttgggaggattgtcttctgata |
78 |
Q |
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||||| ||||||||||||||||||||||||||| |
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|
| T |
2052050 |
tttctctgtatttgggaggattgtcttctgata |
2052018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 48904896 - 48904947
Alignment:
| Q |
46 |
tttctttgtatttgggaggattgtcttctgataaaaattcttttataggtcc |
97 |
Q |
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||||| |||||||||||||||||||||| ||||| | ||| ||||||||||| |
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| T |
48904896 |
tttctctgtatttgggaggattgtcttcagataatagttcctttataggtcc |
48904947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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