View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8662_low_20 (Length: 221)
Name: NF8662_low_20
Description: NF8662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8662_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 82 - 205
Target Start/End: Original strand, 20602911 - 20603034
Alignment:
| Q |
82 |
aacaaaatattgtttgttatttcttttaattttgtccattcaaatctatatagtacagacaaatctaaaaacacaaaatctaaaattaaattagtttttt |
181 |
Q |
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| T |
20602911 |
aacaaaatattgtttgttatttcttttaattttgtccattcaaatctatatagtacagacaaatctaaaaacacaaaatctaaaattaaattagtttttt |
20603010 |
T |
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| Q |
182 |
ccacccttaattcaatatatactt |
205 |
Q |
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| T |
20603011 |
ccacccttaattcaatatatactt |
20603034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 20547131 - 20547325
Alignment:
| Q |
7 |
ctaactagataatagtacaaacaattttttagcaaatatatcaaattaat--gaattaattgagattattgtatttaaacaaaatattgtttgttatttc |
104 |
Q |
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| T |
20547131 |
ctaactagagaatagtacaaacaatttat-agcaaatatatcaaattaatttgaattaactgagattattgcatttaaa-aaaatattgtttgtaatttc |
20547228 |
T |
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| Q |
105 |
ttttaattttgtccattcaaatctatatagtacagacaaatctaaaaacacaaaatctaaaattaaattagttttttccaccc-ttaattcaatata |
200 |
Q |
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| T |
20547229 |
ttttaatttagtccattcaaatctatatagaatagacaaatcttacatcacaaaatataaaataaaaatagttttttccacccattaattcagtata |
20547325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 20602804 - 20602893
Alignment:
| Q |
7 |
ctaactagataatagtacaaacaattttttagcaaatatatcaaattaatgaattaattgagattattgtatttaaacaaaatattgttt |
96 |
Q |
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| T |
20602804 |
ctaattagataatagtacaaacaattttttagcaaatatatcaaattaatgaattaattgagattattgtatttaaacaaaatattgttt |
20602893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 60 - 205
Target Start/End: Original strand, 20592286 - 20592432
Alignment:
| Q |
60 |
ttaattgagattattgtatttaaacaaaatattgtttgttatttcttttaattttgtccattcaaatctatatagtacagacaaatctaaaaacacaaaa |
159 |
Q |
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|||||| ||||||||| ||||||| ||||||| |||||| |||||||||||||| |||||||||||| ||||||| | |||||||||| | | ||||||| |
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| T |
20592286 |
ttaatttagattattgcatttaaaaaaaatatggtttgtgatttcttttaatttagtccattcaaatttatatagaatagacaaatcttacatcacaaaa |
20592385 |
T |
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| Q |
160 |
tctaaaattaaattagttttttcca-cccttaattcaatatatactt |
205 |
Q |
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| T |
20592386 |
tataaaattaaaatagttttttccatccattaattcagtatagactt |
20592432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 13097548 - 13097625
Alignment:
| Q |
102 |
ttcttttaattttgtccattcaaatctatatagtacagacaaatctaaaaacacaaaatctaaaattaaattagtttt |
179 |
Q |
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|||||||||||| || |||| ||||||||||| | ||||||||||| |||| |||||||||||||||||||| |||| |
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| T |
13097548 |
ttcttttaatttagttcattgaaatctatatataatagacaaatctagaaacccaaaatctaaaattaaattactttt |
13097625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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