View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8662_low_3 (Length: 535)
Name: NF8662_low_3
Description: NF8662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8662_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 9 - 516
Target Start/End: Complemental strand, 45889308 - 45888794
Alignment:
| Q |
9 |
tggtgttactgcgagattataaaaattatggtggctttgatttagtagaagttataaaatgtaacttttgtttttgttaaaattacggatttattatgat |
108 |
Q |
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| T |
45889308 |
tggtgttactgcgagattatataaattatggtggctttgatttagtagatgttataaaatgtaacttttgtttttgttaaaattacggatttattatgat |
45889209 |
T |
|
| Q |
109 |
tttgagtttacactataagactctaaagtcttgttaaataattgtc-----tagattataatccgtgatccatcgtgatttcatttaataaactaagttc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45889208 |
tttgagtttacactataagactctaaagtcttgttaaataattgtcaagattagataataatccgtgatccatcgtgatttcatttaataaactaagttc |
45889109 |
T |
|
| Q |
204 |
acctcaaagagggattaacatggagaactggtatattaacaaacgtaattaggta-nnnnnnnnnctttcaaaaagattgaaaccacatgaagggaggtt |
302 |
Q |
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|||| ||||||||||||||||||||| || |||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45889108 |
accttaaagagggattaacatggagacctagtatattaacaattgtatttaggtactttttttttctttcaaaaagattgaaaccacatgaagggaggtt |
45889009 |
T |
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| Q |
303 |
gggacagaaagagaaactttgctcactacctcccccactaatatgaacattttatttaagttcgtaaaagcatacacatcgtctgtcaaaatggatggta |
402 |
Q |
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| T |
45889008 |
gggacagaaagagaaactttgctcactacctcccccactaatatgaacattttgattaagttcgtaagagcatacacatcgtcggtcaaaataggtggta |
45888909 |
T |
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| Q |
403 |
acacattaatcaatgcttttatgtcacattatcttggataattgccattggatatgagtagctaaactattcatagttgcaatg-actgccacggttctt |
501 |
Q |
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| T |
45888908 |
atacattaaccaatgcttttgtgtcatagtaacttggataattggcattggatatgagtagctaaattatccatagttgcaatgcactgccacggttctt |
45888809 |
T |
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| Q |
502 |
ttcctgtgttggtca |
516 |
Q |
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| T |
45888808 |
ttcttgtattggtca |
45888794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 432 - 504
Target Start/End: Complemental strand, 1995867 - 1995794
Alignment:
| Q |
432 |
tatcttggataattgccattggatatgagtagctaaactattcatagttgcaatg-actgccacggttcttttc |
504 |
Q |
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| T |
1995867 |
tatcttggataattggcattggatatgagtagctaaaccaaccatagtagcaatgcattgccacgattcttttc |
1995794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 371 - 507
Target Start/End: Complemental strand, 35424468 - 35424332
Alignment:
| Q |
371 |
agcatacacatcgtctgtcaaaatggatggtaacacattaatcaatgcttttatgtcacattatcttggataattgccattggatatgagtagctaaact |
470 |
Q |
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| T |
35424468 |
agcacacatatcgcctggcataatgggtggtaacactctaatcaatgcatttgtgtcatagtatcttagataattggcaccgggtatgagtagctaaa-t |
35424370 |
T |
|
| Q |
471 |
attcatagttgcaatg-actgccacggttcttttcctg |
507 |
Q |
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| T |
35424369 |
atccatagtagcaatgcattaccacggttctttccctg |
35424332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 371 - 472
Target Start/End: Complemental strand, 4925398 - 4925297
Alignment:
| Q |
371 |
agcatacacatcgtctgtcaaaatggatggtaacacattaatcaatgcttttatgtcacattatcttggataattgccattggatatgagtagctaaact |
470 |
Q |
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||||||| ||||||||||| | |||| ||||| |||| ||| ||||||| || ||||| | |||| |||||||||| | ||||| ||||||| |||||| |
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| T |
4925398 |
agcatacgcatcgtctgtccatatgggtggtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaattgagtagttaaact |
4925299 |
T |
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| Q |
471 |
at |
472 |
Q |
| |
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|| |
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| T |
4925298 |
at |
4925297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 482
Target Start/End: Original strand, 18565554 - 18565643
Alignment:
| Q |
393 |
atggatggtaacacattaatcaatgcttttatgtcacattatcttggataattgccattggatatgagtagctaaactattcatagttgc |
482 |
Q |
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| T |
18565554 |
atgggtggcaacacaataaccaatgtctttgtgtcacaatatcttggataattggcattgaagaagagtagccaaactctccatagttgc |
18565643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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