View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8662_low_4 (Length: 456)
Name: NF8662_low_4
Description: NF8662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8662_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 10 - 437
Target Start/End: Complemental strand, 25744370 - 25743942
Alignment:
| Q |
10 |
attattctgagaaggactatacagttaagttcaagtaaaagtgtaacatacccgggaaatgctttggaataaaaagccttaaaacaacagcaactaaagc |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25744370 |
attattctgagaaggactatacagttaagttcaagtaaaagtgtaacatacctgggaaatgctttggaataaaaagccttaaaacaacagcaactaaagc |
25744271 |
T |
|
| Q |
110 |
aatccattttccaatctctcctctgcgtagtcatgcaaataagtagaataatattagacaaaaatgaaggtacaaatttgataacatcaaagcatgaa-g |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
25744270 |
aatccattttccaatctctcctctgcgtagtcatgcaaataagtagaataatattagacaaaaatgaaggtacaaatttgataacatcaaagcgtgaaag |
25744171 |
T |
|
| Q |
209 |
ataaatcacctgaatacagcgaaaacaaaagaaggcaagctgaagaaaatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgat |
308 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25744170 |
ttaaatcacctgattacattgaaaacaaaagaaggcaagctgaagaaaatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgat |
25744071 |
T |
|
| Q |
309 |
ccaaaaccaacaaatatctgcagagaacatattaacataatcagtgaagtcatagaaggactatagatttaattcatttttagtttcttacacaacaaaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
25744070 |
ccaaaaccaacaaatatctgcagagaacatattaacataatcagtgaagtcatagaaggactatagttttcattcatttttagtttcttacacaacaaaa |
25743971 |
T |
|
| Q |
409 |
catgatgaaactttgacactggttagtaa |
437 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
25743970 |
catgatgaaactttgacactggttagtaa |
25743942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 27 - 353
Target Start/End: Complemental strand, 25740653 - 25740326
Alignment:
| Q |
27 |
tatacagttaagttcaagtaaaagtgtaacatacccgggaaatgctttggaataaaaagccttaaaacaacagcaactaaagcaatccattttccaatct |
126 |
Q |
| |
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||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25740653 |
tatactgttaagtttaagtaaaagtgtaacataccagggaaatgctttggaataaaaagccttaaaacaacagcaactaaagcaatccattttccaatct |
25740554 |
T |
|
| Q |
127 |
ctcctctgcgtagtcatgcaaataagtagaataatattagacaaaaatgaaggtacaaatttgataacatcaaagcatg-aagataaatcacctgaatac |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| ||| |
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| T |
25740553 |
ctcctctgcgtagtcatgcaaataagtagaataatattagacaaaaatgaaggtacaaatttgataacatcaaagcgtgaaagttaaatcacctgattac |
25740454 |
T |
|
| Q |
226 |
agcgaaaacaaaagaaggcaagctgaagaaaatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaacaaatat |
325 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25740453 |
attgaaaacaaaagaaggcaagctgaagaaaatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaacaaataa |
25740354 |
T |
|
| Q |
326 |
ctgcagagaacatattaacataatcagt |
353 |
Q |
| |
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||||||| ||||| |||||||||||||| |
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| T |
25740353 |
ctgcagacaacatgttaacataatcagt |
25740326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 80 - 315
Target Start/End: Complemental strand, 17383504 - 17383269
Alignment:
| Q |
80 |
aaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcgtagtcatgcaaataagtagaataatattagacaaaaatgaagg |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||||||| |||||||||||||| |
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| T |
17383504 |
aaaaagccttaaaacaacagcaactaaagcaattcattttccaatctctcctctgcatagtcataaaaataagtataataatatgtgacaaaaatgaagg |
17383405 |
T |
|
| Q |
180 |
tacaaatttgataacatcaaagcatg-aagataaatcacctgaatacagcgaaaacaaaagaaggcaagctgaagaaaatgtatggaatgagtagtgatg |
278 |
Q |
| |
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|||| ||||||||| ||| ||| || |||| ||||||| ||| ||| |||||| | |||| |||||||||||| ||||||||||||||||||||||| |
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| T |
17383404 |
tacatatttgataatatc-aagtgtgaaagacaaatcacttgatgacatagaaaactatagaaagcaagctgaagataatgtatggaatgagtagtgatg |
17383306 |
T |
|
| Q |
279 |
taagaatgtttgtcttccagtttgtgcgatccaaaac |
315 |
Q |
| |
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||||||||||| |||||| ||||||||||||||||| |
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| T |
17383305 |
taagaatgtttaccttccaatttgtgcgatccaaaac |
17383269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 80 - 319
Target Start/End: Complemental strand, 8535089 - 8534851
Alignment:
| Q |
80 |
aaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcgtagtcatgcaaataagtagaataatattagacaaaaatgaagg |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
8535089 |
aaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcatagtcatgaaaataagtagaataatatgagacaaaaatgaagg |
8534990 |
T |
|
| Q |
180 |
tacaaatttgataacatcaaagcatg-aagataaatcacctgaatacagcgaaaacaaaagaaggcaagctgaagaaaatgtatggaatgagtagtgatg |
278 |
Q |
| |
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| || ||||||||| ||| ||| || |||| |||||| |||| ||| |||||| | |||| ||||||||||||||||||||||||||||||||||| |
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| T |
8534989 |
tgcatatttgataatatc-aagtgtgaaagacaaatcatctgatgacatagaaaactatagaaatcaagctgaagaaaatgtatggaatgagtagtgatg |
8534891 |
T |
|
| Q |
279 |
taagaatgtttgtcttccagtttgtgcgatccaaaaccaac |
319 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||| |
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| T |
8534890 |
taagaa-gtttgtcttccagtttgtgcgatccaaaaccaac |
8534851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 260 - 319
Target Start/End: Complemental strand, 36450133 - 36450074
Alignment:
| Q |
260 |
tatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaac |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
36450133 |
tatggaatgagtagtgatgtaagaatgtttgtcttccagtatgtgcgatccaaaaccaac |
36450074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 251 - 331
Target Start/End: Complemental strand, 12510115 - 12510035
Alignment:
| Q |
251 |
aagaaaatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaacaaatatctgcag |
331 |
Q |
| |
|
||||||||||| ||||||||||||||||| | |||||| |||||||||||||| |||||||||| ||||||||| |||||| |
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|
| T |
12510115 |
aagaaaatgtagggaatgagtagtgatgtgaaaatgttggtcttccagtttgtacgatccaaaatcaacaaataactgcag |
12510035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 330
Target Start/End: Complemental strand, 12514013 - 12513869
Alignment:
| Q |
187 |
ttgataacatcaaagcatgaagata-aatcacctgaatacagcgaaaacaaaagaaggcaagctgaagaaaatgtatggaatgagtagtgatgtaagaat |
285 |
Q |
| |
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||||||||| |||||||||||| ||||||||||| ||| |||||| | ||||||| |||||| ||||||||||||| |||||||||||| | | | |
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|
| T |
12514013 |
ttgataacactaaagcatgaagagctaatcacctgaagacaccgaaaatccatgaaggcaggctgaaaaaaatgtatggaacgagtagtgatgtgaaagt |
12513914 |
T |
|
| Q |
286 |
gtttgtcttccagtttgtgcgatccaaaaccaacaaatatctgca |
330 |
Q |
| |
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||| |||| ||||||||| ||||||||| ||||| ||| ||||| |
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|
| T |
12513913 |
gttggtctcccagtttgtacgatccaaactcaacagataactgca |
12513869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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