View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8662_low_6 (Length: 429)

Name: NF8662_low_6
Description: NF8662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8662_low_6
NF8662_low_6
[»] chr7 (3 HSPs)
chr7 (17-415)||(44871950-44872348)
chr7 (172-387)||(44871846-44872061)
chr7 (135-275)||(44871889-44872029)
[»] chr3 (12 HSPs)
chr3 (211-428)||(47527599-47527816)
chr3 (261-392)||(47527583-47527714)
chr3 (19-355)||(47522071-47522413)
chr3 (123-392)||(47527844-47528110)
chr3 (121-392)||(47527374-47527645)
chr3 (274-407)||(47527797-47527927)
chr3 (189-322)||(47527778-47527911)
chr3 (19-70)||(47527320-47527371)
chr3 (219-392)||(47522145-47522315)
chr3 (337-411)||(47527389-47527463)
chr3 (69-114)||(47527856-47527901)
chr3 (284-359)||(47549704-47549782)


Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 415
Target Start/End: Complemental strand, 44872348 - 44871950
Alignment:
Q  17 gtttgcattgaacaaggagggtgttccctcaaacactcttcaactgcagcaccaatttcttcgtctccattagagttgaaaaagctatcgagagaatccc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44872348 gtttgcattgaacaaggagggtgttccctcaaacactcttcaaccgcagcaccaatttcttcgtctccattagagttgaaaaagcgatcgagagaatccc 44872249  T
Q  117 atcaaacagcagcagcaacaattttttcctctgcattacagttgaaaaaacgacagagaaaatccaaggaagcagtaacaagagcatttactttgtctgc 216  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44872248 atgaaacagcagcagcaacaattttttcctctgcattacagttgaaaaaacgacagagaaaatccaaggaagcagtagcaagagcatttactttgtctgc 44872149  T
Q  217 attacagttgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgag 316  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44872148 attacagtcgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgag 44872049  T
Q  317 gaagcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtct 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44872048 gaagcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtct 44871950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 387
Target Start/End: Complemental strand, 44872061 - 44871846
Alignment:
Q  172 gagaaaatccaaggaagcagtaacaaga---gcatttactttgtctgcattacagttgaaggagcgaccgggagaatccgaggaaacagcagcaacatca 268  Q
    |||||||||| ||||||||| ||||| |   ||| || |||  ||| ||||||||||||| | || |||| |||||||||||||| ||| ||| | | ||    
T  44872061 gagaaaatccgaggaagcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagca 44871962  T
Q  269 atttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgc 368  Q
     ||| |||| |||| |||||||||||||||  ||||| | ||||| |||||| ||   || || || |||||| |||||||| |||||| ||||||| ||    
T  44871961 ttttctttgtctccattacagtcgaaagagagactgaaagaatccaaggaagaag---cagcagcatcaatttattcttctcaattacatttgaaagagc 44871865  T
Q  369 aaccgagagaatccgagga 387  Q
    |||| |||||||| |||||    
T  44871864 aacccagagaatctgagga 44871846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 275
Target Start/End: Complemental strand, 44872029 - 44871889
Alignment:
Q  135 caattttttcctctgcattacagttgaaaaaacgacagagaaaatccaaggaagcagtaacaagagcatttactttgtctgcattacagttgaaggagcg 234  Q
    |||||| ||| ||| ||||||||||||||   | || |||| ||||| ||||||||||| | ||||||||| |||||||| ||||||||| ||| ||| |    
T  44872029 caatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagag 44871930  T
Q  235 accgggagaatccgaggaaacagcagcaacatcaatttatt 275  Q
    || |  ||||||| |||||  ||||||| ||||||||||||    
T  44871929 actgaaagaatccaaggaagaagcagcagcatcaatttatt 44871889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 211 - 428
Target Start/End: Original strand, 47527599 - 47527816
Alignment:
Q  211 gtctgcattacagttgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaa---tttatttgcctcctttacagtcgaaagagcaactgaga 307  Q
    |||| ||||||||| ||| |||| || | ||||||||| |||| ||||||||||| |||   ||| |||| |||| |||||||||||||||| |||||||    
T  47527599 gtctccattacagtcgaatgagcaactgagagaatccgtggaagcagcagcaacaacaacaatttctttgtctccattacagtcgaaagagcgactgaga 47527698  T
Q  308 aaatccgaggaagcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcatttt 407  Q
     |||| |||||||||||| ||| | ||   || | ||| |||||||||||| |||||||||||||||  |||||||||| | ||||||| |||| |||||    
T  47527699 gaatctgaggaagcagcagcaatatca---atatattcatctccattacagctgaaagtgcaaccgaaggaatccgaggtatcagtagcaagaggatttt 47527795  T
Q  408 ctttgtcttcatctcactcga 428  Q
    |||||||| ||| ||| ||||    
T  47527796 ctttgtctccatttcagtcga 47527816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 261 - 392
Target Start/End: Original strand, 47527583 - 47527714
Alignment:
Q  261 caacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaatttcttcttctccattacagtt 360  Q
    |||||||||| |||| | |||| ||||||||||| |||||||||||| |||||| |||||||||| |||||||| |||||||||  |||||||||||||     
T  47527583 caacatcaatatattggtctccattacagtcgaatgagcaactgagagaatccgtggaagcagcagcaacaacaacaatttctttgtctccattacagtc 47527682  T
Q  361 gaaagtgcaaccgagagaatccgaggaagcag 392  Q
    ||||| || || ||||||||| ||||||||||    
T  47527683 gaaagagcgactgagagaatctgaggaagcag 47527714  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 47522071 - 47522413
Alignment:
Q  19 ttgcattgaacaaggagggtgttccctcaaacactcttcaactgcagcac------caatttcttcgtctccattagagttgaaaaagctatcgagagaa 112  Q
    |||||||||| ||||||||||||||| | ||| | ||||||||||||||       ||||||||||| ||||| || |||||||||||  ||||||||||    
T  47522071 ttgcattgaagaaggagggtgttcccccgaacgcccttcaactgcagcaataacgtcaatttcttcgcctccactacagttgaaaaagagatcgagagaa 47522170  T
Q  113 tcccatcaaacagcagcagcaacaattttttcctctgcattacagttgaaaaaacgacagagaaaatccaaggaagcagtaacaagagcatttactttgt 212  Q
    ||| |  |||||| || | ||||||||| |   ||| |||| |||| ||||||  ||| |||| ||||  ||||| ||| | ||| | || ||  || ||    
T  47522171 tccgaggaaacagaaggaacaacaatttctctgtctccattgcagtcgaaaaagagaccgagagaatctgaggaaacagcagcaatatcaatttattcgt 47522270  T
Q  213 ctgcattacagttgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatc 312  Q
    || | ||||| | ||| |||| |||| |||||||| ||||| |||||||||||||||| |||| | |||| || | |||||||||| |||||||| ||||    
T  47522271 ctcctttacaatcgaaagagctaccgagagaatcccaggaagcagcagcaacatcaatctattggtctccattgccgtcgaaagagaaactgagagaatc 47522370  T
Q  313 cgaggaagcagcaacaacaacagcaatttcttcttctccatta 355  Q
    |||||| | |||| || ||||  |||||||||  |||||||||    
T  47522371 cgaggaggaagcagcagcaactacaatttctttgtctccatta 47522413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 392
Target Start/End: Original strand, 47527844 - 47528110
Alignment:
Q  123 cagcagcagcaacaattttttcctctgcattacagttgaaaaaacgacagagaaaatccaaggaagcagtaacaagagcatttactttgtctgcattaca 222  Q
    |||||||| ||||||||| ||| ||| |||||||||||||| | | || |||| ||||  |||||||| ||  ||||||||||   |||||| |||||||    
T  47527844 cagcagcaacaacaatttcttcgtctccattacagttgaaagagcaaccgagagaatctgaggaagcattagtaagagcattttacttgtctccattaca 47527943  T
Q  223 gttgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagca 322  Q
    || ||| ||||||| | |||||| ||||||| |||||||||||| |||||||| |  ||| ||||||   |||||||||  |||| |||| || ||||||    
T  47527944 gtcgaaagagcgactgcgagaatgcgaggaagcagcagcaacattaatttattcgtttccattacagataaaagagcaatggagagaatctgatgaagca 47528043  T
Q  323 gcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcag 392  Q
    ||| ||| ||   ||||||||   ||||||||||||  ||||  |||||| |  ||||||||||||||||    
T  47528044 gcatcaaaaa---caatttctctgtctccattacagccgaaaaagcaaccaaatgaatccgaggaagcag 47528110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 121 - 392
Target Start/End: Original strand, 47527374 - 47527645
Alignment:
Q  121 aacagcagcagcaacaattttttcctctgcattacagttgaaaaaacgacagagaaaatccaaggaagcagtaacaagagcatttactttgtctgcatta 220  Q
    |||||||||| ||| ||||| ||  ||| ||| ||||| |||||| || |  ||| ||||| ||||||| | | | ||||||||| |||| |||  | ||    
T  47527374 aacagcagcaacaataatttctttgtctccatcacagtcgaaaaagcgtcctagagaatccgaggaagctggagctagagcattttctttttctcaacta 47527473  T
Q  221 cagttgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaag 320  Q
    |||  || |||||||| | || |||| |||||||||||||||||||||||||||| | |   |||||  ||  ||||||||| |||| ||||||||||||    
T  47527474 cagccgacggagcgacagagaaaatctgaggaaacagcagcaacatcaatttattcgtcctgtttactttctgaagagcaaccgagagaatccgaggaag 47527573  T
Q  321 cagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcag 392  Q
     ||  ||||||||| |||| | ||  ||||||||||||| ||| | ||||| ||||||||||| ||||||||    
T  47527574 aagtgacaacaacatcaatatattggtctccattacagtcgaatgagcaactgagagaatccgtggaagcag 47527645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 274 - 407
Target Start/End: Original strand, 47527797 - 47527927
Alignment:
Q  274 tttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccg 373  Q
    |||| |||| || |||||||  |||| |||||||  ||| || ||||||||| ||||||||   |||||||| ||||||||||||||||||| |||||||    
T  47527797 tttgtctccatttcagtcgattgagcgactgagagcatctgatgaagcagcagcaacaaca---atttcttcgtctccattacagttgaaagagcaaccg 47527893  T
Q  374 agagaatccgaggaagcagtagctagagcatttt 407  Q
    |||||||| ||||||||| |||  ||||||||||    
T  47527894 agagaatctgaggaagcattagtaagagcatttt 47527927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 322
Target Start/End: Original strand, 47527778 - 47527911
Alignment:
Q  189 cagtaacaagagcatttactttgtctgcattacagttgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctcctttaca 288  Q
    ||||| |||||| |||| |||||||| |||| |||| ||  ||||||| | ||| ||| || ||| ||||||||||| |||||| || | |||| |||||    
T  47527778 cagtagcaagaggattttctttgtctccatttcagtcgattgagcgactgagagcatctgatgaagcagcagcaacaacaatttcttcgtctccattaca 47527877  T
Q  289 gtcgaaagagcaactgagaaaatccgaggaagca 322  Q
    || ||||||||||| |||| |||| |||||||||    
T  47527878 gttgaaagagcaaccgagagaatctgaggaagca 47527911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 47527320 - 47527371
Alignment:
Q  19 ttgcattgaacaaggagggtgttccctcaaacactcttcaactgcagcacca 70  Q
    |||||||||| ||||||||||||||||||||||| |||||||| ||||||||    
T  47527320 ttgcattgaagaaggagggtgttccctcaaacacccttcaactccagcacca 47527371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 392
Target Start/End: Original strand, 47522145 - 47522315
Alignment:
Q  219 tacagttgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgagga 318  Q
    ||||||||||  || || || |||||||||||||||||| || |||| |||||| | || |||| || ||||||||| ||  || |||| |||| |||||    
T  47522145 tacagttgaaaaagagatcgagagaatccgaggaaacagaaggaacaacaatttctctgtctccattgcagtcgaaaaagagaccgagagaatctgagga 47522244  T
Q  319 agcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcag 392  Q
    | |||   || ||| | |||||| ||| ||||| ||||| | ||||| || ||||||||||||| |||||||||    
T  47522245 aacag---cagcaatatcaatttattcgtctcctttacaatcgaaagagctaccgagagaatcccaggaagcag 47522315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 411
Target Start/End: Original strand, 47527389 - 47527463
Alignment:
Q  337 aatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcattttcttt 411  Q
    ||||||||  ||||||| ||||| ||||  ||  || ||||||||||||||||| | ||||||||||||||||||    
T  47527389 aatttctttgtctccatcacagtcgaaaaagcgtcctagagaatccgaggaagctggagctagagcattttcttt 47527463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 47527856 - 47527901
Alignment:
Q  69 caatttcttcgtctccattagagttgaaaaagctatcgagagaatc 114  Q
    |||||||||||||||||||| |||||||| ||| | ||||||||||    
T  47527856 caatttcttcgtctccattacagttgaaagagcaaccgagagaatc 47527901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 359
Target Start/End: Original strand, 47549704 - 47549782
Alignment:
Q  284 ttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaa---caacagcaatttcttcttctccattacagt 359  Q
    |||||||| ||| ||| || |||| |||||||||||| | ||||||   ||||| |||||||||| |||||||||||||    
T  47549704 ttacagtcaaaaaagcgacagagagaatccgaggaaggaacaacaataacaacaacaatttcttcatctccattacagt 47549782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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