View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8662_low_7 (Length: 396)
Name: NF8662_low_7
Description: NF8662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8662_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 222 - 381
Target Start/End: Complemental strand, 46677587 - 46677428
Alignment:
| Q |
222 |
ctttgtatgtaacttttattatataattatttaccggattatttgcacaaacaccaccatcaatgaggttgaactcacgtacgttgccttctgtatcttg |
321 |
Q |
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| T |
46677587 |
ctttgtatgtaacttttattatataattatttaccggattatttgcacaaacaccaccatcaatgaggttgaactcacgtacgttgccttctgtatcttg |
46677488 |
T |
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| Q |
322 |
gttcttgaagttgtaaccaggaagataagtaggagcagcagaggtactgatgcatatgtc |
381 |
Q |
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| T |
46677487 |
gttcttgaagttgtaaccaggaagataagtaggagcagcagaggtactgatgcatatgtc |
46677428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 46677795 - 46677655
Alignment:
| Q |
12 |
tttggtgttccggtgcccaatgagattattagaaaacggctatactccatgggcttgatggcatagaagtcatcattctcattgattatctgcgtcgtta |
111 |
Q |
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| T |
46677795 |
tttggtgttccggtgcccaatgagattattagaaaacggctatactccatgggcttgatggcatagaagtcattattctcattgattatctgcgtcgtta |
46677696 |
T |
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| Q |
112 |
cttcattcacggctactaaagcctagaacattgatcatcac |
152 |
Q |
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| T |
46677695 |
cttcattcacggctactaaagcctagaacattgatcatcac |
46677655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 253 - 384
Target Start/End: Complemental strand, 46681533 - 46681402
Alignment:
| Q |
253 |
taccggattatttgcacaaacaccaccatcaatgaggttgaactcacgtacgttgccttctgtatcttggttcttgaagttgtaaccaggaagataagta |
352 |
Q |
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| T |
46681533 |
taccggattatttgcacaaacacctccatcaataaggttgaattcatgtgtgttgccttctgtatcttggttcttgaaattgtaacctggaagataagta |
46681434 |
T |
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| Q |
353 |
ggagcagcagaggtactgatgcatatgtctga |
384 |
Q |
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| T |
46681433 |
ggtgcagcagaggtgctgatacatatgtctga |
46681402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 46681728 - 46681635
Alignment:
| Q |
27 |
cccaatgagattattagaaaacggctatactccatgggcttgatggcatagaagtcatcattctcattgattatctgcgtcgttacttcattca |
120 |
Q |
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| T |
46681728 |
cccagtgagattatcaagaaacggctatattccattggcttgatggcatagaagtcattattctgattaattatctgatttgttacttcattca |
46681635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 6090195 - 6090239
Alignment:
| Q |
253 |
taccggattatttgcacaaacaccaccatcaatgaggttgaactc |
297 |
Q |
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| T |
6090195 |
taccggattatttgcacaaacaccaccatcaatgagattgaactc |
6090239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 384
Target Start/End: Original strand, 6090272 - 6090329
Alignment:
| Q |
327 |
tgaagttgtaaccaggaagataagtaggagcagcagaggtactgatgcatatgtctga |
384 |
Q |
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| T |
6090272 |
tgaagttgtgagcagggagataagtaggagcagctgaagtgctaatgcatatgtctga |
6090329 |
T |
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