View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8662_low_8 (Length: 372)
Name: NF8662_low_8
Description: NF8662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8662_low_8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 27777011 - 27777360
Alignment:
| Q |
18 |
cttaatgtttcattatcatattcctatctctttttgtgcttatgctatttcacatgatgatgttcagccaattaaatttttaccatctttgaaattgaac |
117 |
Q |
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| T |
27777011 |
cttaatatttcaatatcagattcctatctctttttgttcttatgctatttcacatgatg---ttcaaccaattaaatttttaccatcttc-aaattgaac |
27777106 |
T |
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| Q |
118 |
aatgaatcaccttattacatcctttacagaaaaacattcatgatatatctcatttcaaggtctttggatctttatgctttgcttctcatagaaagaaatt |
217 |
Q |
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| T |
27777107 |
aatgaatcaccttattacatcctttacaaaaaaa-attcatgatatatctcatttcaaggtctttggatctttatgctttgcttctcatagaaagaaatt |
27777205 |
T |
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| Q |
218 |
tcaggctagagctaaaaagtgtgttttccttggccataaagatgtaaaagggttcgttttatttgatcttattaagagagaattcttttttatctagaca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27777206 |
tcaggctagagctaaaaagtgtgttttccttggccataaagatgtaaaagggttcgttttatttgatcttattaagagagaattcttttttatctagaca |
27777305 |
T |
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| Q |
318 |
tgtgatatttttatgaaaacacatttccttttaatttacttctttatttgcgtcc |
372 |
Q |
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| T |
27777306 |
tgtgatatttttatgaaaacacatttccttttaatttacttctttatttgcgtcc |
27777360 |
T |
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