View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8662_low_9 (Length: 367)
Name: NF8662_low_9
Description: NF8662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8662_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 37917791 - 37918005
Alignment:
| Q |
18 |
gttggtgcatattttttgcctacgtagggtttgaatccttttgtcatttggtagttggcttctgtgatgtaagcttttgaggttgttgagattctttcta |
117 |
Q |
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| T |
37917791 |
gttggtgcatattttttgcctacgtagggtttgaatccttttgtcatttggtagttggcttctgtgatgtaagcttttgaggttgttgagattctttcta |
37917890 |
T |
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| Q |
118 |
ggtctggaagtagtgtgcggtgaaatctgtttggtagatctttgaactctgaaagtgaaacaaaatcatcatcttcatcttcttcttgttcttccaatgt |
217 |
Q |
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| T |
37917891 |
ggtctggaagtagtgtgcggtgaaatctgtttggtagatctttgaactctgaaagtgaaacaaaatcatcatcttcatcttcttcttgttcttccaatgt |
37917990 |
T |
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| Q |
218 |
atgactaggcggtgc |
232 |
Q |
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| T |
37917991 |
atgactaggcggtgc |
37918005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 352
Target Start/End: Original strand, 37918096 - 37918125
Alignment:
| Q |
323 |
cacgagatctaatgtgtttttggttgatgt |
352 |
Q |
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| T |
37918096 |
cacgagatctaatgtgtttttggttgatgt |
37918125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 39613383 - 39613489
Alignment:
| Q |
18 |
gttggtgcatattttttgcctacgtagggtttgaatccttttgtcatttggtagttggcttctgtgatgtaagcttttgaggttgttgagattctttcta |
117 |
Q |
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| T |
39613383 |
gttggtgcgtatttgtttcctacgtagggtttgaaattttttgtgatttctttgttggcttttgttatataagcttttgaggttgttgagattttttcta |
39613482 |
T |
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| Q |
118 |
ggtctgg |
124 |
Q |
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|||||| |
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| T |
39613483 |
agtctgg |
39613489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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